RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 PRORYQ9H606 182 aa6.49□□□□□ -1.37
CLK1-201ENST00000321356 COL12A1Q99715 3063 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 IGHV4-30-2A0A087WSY4 118 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 TRAV12-3A0A0B4J271 114 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 IGHV3-16A0A0C4DH30 117 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 SDHAF1A6NFY7 115 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 MSMBP08118 114 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 CD7P09564 240 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 PSMB8P28062 276 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 RPL39P62891 51 aaKnown RBP6.48□□□□□ -1.37
CLK1-201ENST00000321356 SCGB2A2Q13296 93 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 CD300EQ496F6 205 aaPredicted RBP6.48□□□□□ -1.37
CLK1-201ENST00000321356 KIR2DL4Q99706 377 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 CCL19Q99731 98 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 PGPEP1Q9NXJ5 209 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 FLNCQ14315 2725 aa6.48□□□□□ -1.37
CLK1-201ENST00000321356 A0A087WWL8 130 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 A0A0J9YY99 117 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 HERVK_113P61574 105 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 ETDBQ3ZM63 59 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 ZNF876PQ49A33 203 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 CLEC2AQ6UVW9 174 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 SCGB1D4Q6XE38 83 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 KLHL30-AS1Q8NEE0 82 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.47□□□□□ -1.374e-7■■■■□ 22.2
CLK1-201ENST00000321356 A0A0J9YX75 114 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 J3QR89 54 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 TSPEAR-AS2P59090 65 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 SH2D6Q7Z4S9 175 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 AMELXQ99217 191 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 SPAG8Q99932 426 aaPredicted RBP6.47□□□□□ -1.37
CLK1-201ENST00000321356 SPATA25Q9BR10 227 aa6.47□□□□□ -1.37
CLK1-201ENST00000321356 TMEM89A2RUT3 159 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 M0QY20 66 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 TSPAN13O95857 204 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 AVPP01185 164 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 EMP1P54849 157 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 UBE2D3P61077 147 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 UBE2D2P62837 147 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 SRSF9Q13242 221 aaKnown RBP eCLIP6.46□□□□□ -1.38
CLK1-201ENST00000321356 NSUN5P1Q3KNT7 163 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 TMEM95Q3KNT9 176 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 NFE4Q86UQ8 179 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 ZNRF2Q8NHG8 242 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 MRPL16Q9NX20 251 aaKnown RBP6.46□□□□□ -1.38
CLK1-201ENST00000321356 TSSC4Q9Y5U2 329 aaPredicted RBP6.46□□□□□ -1.38
CLK1-201ENST00000321356 CRYBG3Q68DQ2 2970 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 DOPEY1Q5JWR5 2465 aa6.46□□□□□ -1.38
CLK1-201ENST00000321356 SPG11Q96JI7 2443 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 F5H697 171 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 K7EQG2 157 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 SCGB1A1P11684 91 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 ATP5J2P56134 94 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 RHOHQ15669 191 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 CFAP126Q5VTH2 177 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 RNF152Q8N8N0 203 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 SLC25A29Q8N8R3 303 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 SYT8Q8NBV8 401 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 WFDC12Q8WWY7 111 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 MDFICQ9P1T7 246 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 PKD1L2Q7Z442 2459 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 GAGE12HA6NDE8 117 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 B4DSR2 109 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 IGHV3-30P01768 117 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 ZNF688P0C7X2 276 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 IGHV3-30-5P0DP03 117 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 SMCPP49901 116 aaPredicted RBP6.45□□□□□ -1.38
CLK1-201ENST00000321356 NDUFA11Q86Y39 141 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 Q8N1Y9 231 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 MTURNQ8N3F0 131 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 ATP6V0E2Q8NHE4 81 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 DLX4Q92988 240 aaPredicted RBP6.45□□□□□ -1.38
CLK1-201ENST00000321356 SIGMAR1Q99720 223 aa6.45□□□□□ -1.38
CLK1-201ENST00000321356 IGHV1OR15-1A0A075B7D0 117 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 J3QQQ9 107 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 P0DMU3 169 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 FAM231AP0DMU4 169 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 FAM231CP0DMU5 169 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 AZU1P20160 251 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 GATA3P23771 443 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 SNRPD3P62318 126 aaKnown RBP6.44□□□□□ -1.38
CLK1-201ENST00000321356 FAM74A4Q5TZK3 123 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 TRPT1Q86TN4 253 aaKnown RBP6.44□□□□□ -1.38
CLK1-201ENST00000321356 DEFB104AQ8WTQ1 72 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 ZNF256Q9Y2P7 627 aaPredicted RBP6.44□□□□□ -1.38
CLK1-201ENST00000321356 USP9XQ93008 2570 aaPredicted RBP6.44□□□□□ -1.38
CLK1-201ENST00000321356 CSPG4Q6UVK1 2322 aa6.44□□□□□ -1.38
CLK1-201ENST00000321356 TRAV12-2A0A075B6T6 113 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 IGHV4-59P01825 116 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 INSL3P51460 131 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 ZNF56Q15929 161 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 TMEM170BQ5T4T1 132 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 C10orf99Q6UWK7 81 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 GTSF1LQ9H1H1 148 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 TMEM223A0PJW6 202 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 APOMO95445 188 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 CFC1BP0CG36 223 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 CFC1P0CG37 223 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 LYRM7Q5U5X0 104 aa6.43□□□□□ -1.38
CLK1-201ENST00000321356 C20orf203Q8NBC4 194 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms