RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 GAGE5Q13069 117 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 GAGE13Q4V321 117 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 FAM74A4Q5TZK3 123 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 PRR27Q6MZM9 219 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 C14orf178Q8N769 122 aaPredicted RBP11.03□□□□□ -0.64
LSM1-201ENST00000311351 ATP6V0E2Q8NHE4 81 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 MLST8Q9BVC4 326 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 MSRB1Q9NZV6 116 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 PHLDA3Q9Y5J5 127 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 APOBP04114 4563 aaKnown RBP11.02□□□□□ -0.64
LSM1-201ENST00000311351 A0A087WWL8 130 aa11.02□□□□□ -0.65
LSM1-201ENST00000311351 IGHV3-38A0A0C4DH36 116 aa11.02□□□□□ -0.65
LSM1-201ENST00000311351 RPL35P42766 123 aaKnown RBP11.02□□□□□ -0.65
LSM1-201ENST00000311351 OR10J3Q5JRS4 329 aa11.02□□□□□ -0.65
LSM1-201ENST00000311351 C11orf52Q96A22 123 aa11.02□□□□□ -0.65
LSM1-201ENST00000311351 ABCA13Q86UQ4 5058 aa11.01□□□□□ -0.65
LSM1-201ENST00000311351 RHODO00212 210 aa11.01□□□□□ -0.65
LSM1-201ENST00000311351 PDE6DO43924 150 aa11.01□□□□□ -0.65
LSM1-201ENST00000311351 NKX2-5P52952 324 aaPredicted RBP11.01□□□□□ -0.65
LSM1-201ENST00000311351 MEF2BQ02080 365 aaPredicted RBP11.01□□□□□ -0.65
LSM1-201ENST00000311351 LELP1Q5T871 98 aa11.01□□□□□ -0.65
LSM1-201ENST00000311351 ALKAL2Q6UX46 152 aa11.01□□□□□ -0.65
LSM1-201ENST00000311351 SFRP2Q96HF1 295 aa11.01□□□□□ -0.65
LSM1-201ENST00000311351 GTSF1LQ9H1H1 148 aa11.01□□□□□ -0.65
LSM1-201ENST00000311351 TRAV8-6A0A0B4J262 113 aa11□□□□□ -0.65
LSM1-201ENST00000311351 BCL2P10415 239 aa11□□□□□ -0.65
LSM1-201ENST00000311351 FUSP35637 526 aaKnown RBP eCLIP11□□□□□ -0.65
LSM1-201ENST00000311351 ERVFC1-1P60608 527 aa11□□□□□ -0.65
LSM1-201ENST00000311351 LINC01556Q5JQF7 62 aa11□□□□□ -0.65
LSM1-201ENST00000311351 NFE4Q86UQ8 179 aa11□□□□□ -0.65
LSM1-201ENST00000311351 ZFP82Q8N141 532 aa11□□□□□ -0.65
LSM1-201ENST00000311351 KRTAP17-1Q9BYP8 105 aa11□□□□□ -0.65
LSM1-201ENST00000311351 K7EP13 123 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 IGHV3-30P01768 117 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 IGHV3-33P01772 117 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 IGHV3-30-3P0DP02 117 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 IGHV3-30-5P0DP03 117 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 CENPWQ5EE01 88 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 Q8N3U1 123 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 C10orf126Q8N4M7 172 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 OR10AG1Q8NH19 301 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 VAX2Q9UIW0 290 aa10.99□□□□□ -0.65
LSM1-201ENST00000311351 MUC21A0A0G2JKD1 596 aa10.98□□□□□ -0.65
LSM1-201ENST00000311351 MUC21A0A140T8X8 626 aa10.98□□□□□ -0.65
LSM1-201ENST00000311351 CXCL1P09341 107 aa10.97□□□□□ -0.65
LSM1-201ENST00000311351 Q9HAA7 133 aa10.97□□□□□ -0.65
LSM1-201ENST00000311351 A0A087WTM6 91 aa10.96□□□□□ -0.65
LSM1-201ENST00000311351 RAB19A4D1S5 217 aa10.96□□□□□ -0.65
LSM1-201ENST00000311351 SNAI2O43623 268 aa10.96□□□□□ -0.65
LSM1-201ENST00000311351 IGLV2-8P01709 118 aa10.96□□□□□ -0.65
LSM1-201ENST00000311351 SMIM12Q96EX1 92 aa10.96□□□□□ -0.65
LSM1-201ENST00000311351 IBA57-AS1B1ANH7 110 aa10.95□□□□□ -0.66
LSM1-201ENST00000311351 CDK2AP2O75956 126 aa10.95□□□□□ -0.66
LSM1-201ENST00000311351 BIN3Q9NQY0 253 aa10.95□□□□□ -0.66
LSM1-201ENST00000311351 TRBV20OR9-2A0A075B6H5 130 aa10.94□□□□□ -0.66
LSM1-201ENST00000311351 EREGO14944 169 aa10.94□□□□□ -0.66
LSM1-201ENST00000311351 GZMBP10144 247 aa10.94□□□□□ -0.66
LSM1-201ENST00000311351 GNG4P50150 75 aa10.94□□□□□ -0.66
LSM1-201ENST00000311351 SSTP61278 116 aa10.94□□□□□ -0.66
LSM1-201ENST00000311351 LYPD6BQ8NI32 183 aa10.94□□□□□ -0.66
LSM1-201ENST00000311351 SSBP4Q9BWG4 385 aaPredicted RBP10.94□□□□□ -0.66
LSM1-201ENST00000311351 MED9Q9NWA0 146 aa10.94□□□□□ -0.66
LSM1-201ENST00000311351 OR5AL1P0C617 328 aa10.93□□□□□ -0.66
LSM1-201ENST00000311351 ZNF56Q15929 161 aa10.93□□□□□ -0.66
LSM1-201ENST00000311351 SPANXN1Q5VSR9 72 aa10.93□□□□□ -0.66
LSM1-201ENST00000311351 KRTAP4-5Q9BYR2 181 aa10.93□□□□□ -0.66
LSM1-201ENST00000311351 C19orf71A6NCJ1 209 aa10.92□□□□□ -0.66
LSM1-201ENST00000311351 RBFOX3A6NFN3 312 aa10.92□□□□□ -0.66
LSM1-201ENST00000311351 TMEM250H0YL14 139 aa10.91□□□□□ -0.66
LSM1-201ENST00000311351 PSCAO43653 123 aa10.91□□□□□ -0.66
LSM1-201ENST00000311351 UBE2D3P61077 147 aa10.91□□□□□ -0.66
LSM1-201ENST00000311351 UBE2D2P62837 147 aa10.91□□□□□ -0.66
LSM1-201ENST00000311351 RPL36AP83881 106 aaKnown RBP10.91□□□□□ -0.66
LSM1-201ENST00000311351 DAZ4Q86SG3 579 aaKnown RBP10.91□□□□□ -0.66
LSM1-201ENST00000311351 OR2D3Q8NGH3 330 aa10.91□□□□□ -0.66
LSM1-201ENST00000311351 RPL36ALQ969Q0 106 aaKnown RBP10.91□□□□□ -0.66
LSM1-201ENST00000311351 DAZAP1Q96EP5 407 aaKnown RBP10.91□□□□□ -0.66
LSM1-201ENST00000311351 TPPP3Q9BW30 176 aa10.91□□□□□ -0.66
LSM1-201ENST00000311351 DAZ3Q9NR90 486 aaKnown RBP10.91□□□□□ -0.66
LSM1-201ENST00000311351 A0A087WWC5 75 aa10.9□□□□□ -0.66
LSM1-201ENST00000311351 TRBV10-1A0A0K0K1A3 114 aa10.9□□□□□ -0.66
LSM1-201ENST00000311351 IGLC6P0CF74 106 aa10.9□□□□□ -0.66
LSM1-201ENST00000311351 RAB4BP61018 213 aa10.9□□□□□ -0.66
LSM1-201ENST00000311351 MAPKAPK5-AS1Q8N8E1 139 aa10.9□□□□□ -0.66
LSM1-201ENST00000311351 PGPEP1Q9NXJ5 209 aa10.9□□□□□ -0.66
LSM1-201ENST00000311351 TRBV7-3A0A075B6L6 115 aa10.89□□□□□ -0.67
LSM1-201ENST00000311351 LRCOL1A6NCL2 159 aa10.89□□□□□ -0.67
LSM1-201ENST00000311351 NDUFS6O75380 124 aaKnown RBP10.89□□□□□ -0.67
LSM1-201ENST00000311351 LAGE3Q14657 143 aa10.89□□□□□ -0.67
LSM1-201ENST00000311351 CDPF1Q6NVV7 123 aa10.89□□□□□ -0.67
LSM1-201ENST00000311351 FER1L6-AS1Q8NA97 138 aa10.89□□□□□ -0.67
LSM1-201ENST00000311351 NEXN-AS1Q8NBZ9 246 aa10.89□□□□□ -0.67
LSM1-201ENST00000311351 OR10G8Q8NGN5 311 aa10.89□□□□□ -0.67
LSM1-201ENST00000311351 AP1S3Q96PC3 154 aa10.89□□□□□ -0.67
LSM1-201ENST00000311351 EIF5A2Q9GZV4 153 aaKnown RBP10.89□□□□□ -0.67
LSM1-201ENST00000311351 LOC100996750A0A140TA64 210 aa10.88□□□□□ -0.67
LSM1-201ENST00000311351 XKRY2A2RUG3 117 aa10.88□□□□□ -0.67
LSM1-201ENST00000311351 RPS20P60866 119 aaKnown RBP10.88□□□□□ -0.67
LSM1-201ENST00000311351 TEX261Q6UWH6 196 aa10.88□□□□□ -0.67
LSM1-201ENST00000311351 NIT1Q86X76 327 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms