RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 NSUN5P1Q3KNT7 163 aa10.58□□□□□ -0.72
C9orf3-202ENST00000297979 AMMECR1LQ6DCA0 310 aa10.58□□□□□ -0.72
C9orf3-202ENST00000297979 IGHV4-4A0A075B6R2 117 aa10.58□□□□□ -0.72
C9orf3-202ENST00000297979 GAGE12HA6NDE8 117 aa10.58□□□□□ -0.72
C9orf3-202ENST00000297979 KNCNA6PVL3 124 aa10.58□□□□□ -0.72
C9orf3-202ENST00000297979 M0R2Z0 102 aa10.58□□□□□ -0.72
C9orf3-202ENST00000297979 ZNF324O75467 553 aaPredicted RBP10.58□□□□□ -0.72
C9orf3-202ENST00000297979 S100A4P26447 101 aaKnown RBP10.58□□□□□ -0.72
C9orf3-202ENST00000297979 OXLD1Q5BKU9 147 aa10.58□□□□□ -0.72
C9orf3-202ENST00000297979 MAP6D1Q9H9H5 199 aa10.58□□□□□ -0.72
C9orf3-202ENST00000297979 TRAV12-3A0A0B4J271 114 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 MED14OSP0DP75 135 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 HLA-DRB4P13762 266 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 HINT1P49773 126 aaPredicted RBP10.57□□□□□ -0.72
C9orf3-202ENST00000297979 MRPL51Q4U2R6 128 aaKnown RBP10.57□□□□□ -0.72
C9orf3-202ENST00000297979 SPANXN1Q5VSR9 72 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 AMTNQ6UX39 209 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 PAM16Q9Y3D7 125 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 HLA-DRB4X5D2U9 266 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 D6R8Y8 96 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 SPINK13Q1W4C9 94 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 FAM159AQ6UWV7 190 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 GTF2H5Q6ZYL4 71 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 ZNF256Q9Y2P7 627 aaPredicted RBP10.57□□□□□ -0.72
C9orf3-202ENST00000297979 TIMM8BQ9Y5J9 83 aaPredicted RBP10.57□□□□□ -0.72
C9orf3-202ENST00000297979 U3KQK5 164 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 TRAV12-2A0A075B6T6 113 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 HSBP1O75506 76 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 NDUFA11Q86Y39 141 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 ORMDL3Q8N138 153 aa10.57□□□□□ -0.72
C9orf3-202ENST00000297979 KRTAP10-3P60369 221 aa10.56□□□□□ -0.72
C9orf3-202ENST00000297979 URB1-AS1Q96HZ7 61 aa10.56□□□□□ -0.72
C9orf3-202ENST00000297979 A8MTW9 85 aa10.56□□□□□ -0.72
C9orf3-202ENST00000297979 H3BMM0 161 aa10.56□□□□□ -0.72
C9orf3-202ENST00000297979 GNRH2O43555 120 aa10.56□□□□□ -0.72
C9orf3-202ENST00000297979 RNF185Q96GF1 192 aa10.56□□□□□ -0.72
C9orf3-202ENST00000297979 AGRNO00468 2067 aa10.55□□□□□ -0.72
C9orf3-202ENST00000297979 Q6ZWC4 215 aa10.55□□□□□ -0.72
C9orf3-202ENST00000297979 NEGR1Q7Z3B1 354 aa10.55□□□□□ -0.72
C9orf3-202ENST00000297979 CHCHD1Q96BP2 118 aaKnown RBP10.55□□□□□ -0.72
C9orf3-202ENST00000297979 PRELID3AQ96N28 172 aa10.55□□□□□ -0.72
C9orf3-202ENST00000297979 SCRT2Q9NQ03 307 aa10.55□□□□□ -0.72
C9orf3-202ENST00000297979 FAM19A2Q8N3H0 131 aa10.55□□□□□ -0.72
C9orf3-202ENST00000297979 HIVEP1P15822 2718 aa10.55□□□□□ -0.72
C9orf3-202ENST00000297979 NSD1Q96L73 2696 aaPredicted RBP10.55□□□□□ -0.72
C9orf3-202ENST00000297979 FN1P02751 2386 aaKnown RBP10.54□□□□□ -0.72
C9orf3-202ENST00000297979 SMIM17P0DL12 118 aa10.54□□□□□ -0.72
C9orf3-202ENST00000297979 RNASE3P12724 160 aaKnown RBP10.54□□□□□ -0.72
C9orf3-202ENST00000297979 CKS2P33552 79 aa10.54□□□□□ -0.72
C9orf3-202ENST00000297979 PHLDA3Q9Y5J5 127 aa10.54□□□□□ -0.72
C9orf3-202ENST00000297979 EVI2AP22794 236 aa10.53□□□□□ -0.72
C9orf3-202ENST00000297979 C1QTNF4Q9BXJ3 329 aa10.53□□□□□ -0.72
C9orf3-202ENST00000297979 M0R381 172 aa10.53□□□□□ -0.72
C9orf3-202ENST00000297979 CD7P09564 240 aa10.53□□□□□ -0.72
C9orf3-202ENST00000297979 HNRNPA3P51991 378 aaKnown RBP10.53□□□□□ -0.72
C9orf3-202ENST00000297979 TEX43Q6ZNM6 134 aa10.53□□□□□ -0.72
C9orf3-202ENST00000297979 SORL1Q92673 2214 aa10.53□□□□□ -0.72
C9orf3-202ENST00000297979 RBMY1BA6NDE4 496 aaKnown RBP10.53□□□□□ -0.72
C9orf3-202ENST00000297979 RBMY1EA6NEQ0 496 aaKnown RBP10.53□□□□□ -0.72
C9orf3-202ENST00000297979 SMKR1H3BMG3 65 aa10.53□□□□□ -0.72
C9orf3-202ENST00000297979 RBMY1DP0C7P1 496 aaKnown RBP10.53□□□□□ -0.72
C9orf3-202ENST00000297979 ODF3L2Q3SX64 289 aa10.53□□□□□ -0.72
C9orf3-202ENST00000297979 SETXQ7Z333 2677 aaKnown RBP10.52□□□□□ -0.72
C9orf3-202ENST00000297979 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.52□□□□□ -0.73
C9orf3-202ENST00000297979 NCR2O95944 276 aa10.52□□□□□ -0.73
C9orf3-202ENST00000297979 FXYD7P58549 80 aa10.52□□□□□ -0.73
C9orf3-202ENST00000297979 WNK1Q9H4A3 2382 aa10.52□□□□□ -0.73
C9orf3-202ENST00000297979 IGHV1OR15-1A0A075B7D0 117 aa10.52□□□□□ -0.73
C9orf3-202ENST00000297979 SPRY2O43597 315 aa10.52□□□□□ -0.73
C9orf3-202ENST00000297979 ANAPC13Q9BS18 74 aa10.52□□□□□ -0.73
C9orf3-202ENST00000297979 VAMP8Q9BV40 100 aa10.52□□□□□ -0.73
C9orf3-202ENST00000297979 NPYP01303 97 aa10.51□□□□□ -0.73
C9orf3-202ENST00000297979 PRSS3P2Q8NHM4 247 aa10.51□□□□□ -0.73
C9orf3-202ENST00000297979 SPATA25Q9BR10 227 aa10.51□□□□□ -0.73
C9orf3-202ENST00000297979 SETD2Q9BYW2 2564 aaPredicted RBP10.51□□□□□ -0.73
C9orf3-202ENST00000297979 NXPH4O95158 308 aa10.51□□□□□ -0.73
C9orf3-202ENST00000297979 IGLV1-51P01701 117 aa10.51□□□□□ -0.73
C9orf3-202ENST00000297979 Q6ZN92 141 aa10.51□□□□□ -0.73
C9orf3-202ENST00000297979 CRXO43186 299 aaPredicted RBP10.5□□□□□ -0.73
C9orf3-202ENST00000297979 FA2HQ7L5A8 372 aa10.5□□□□□ -0.73
C9orf3-202ENST00000297979 IGHV3-16A0A0C4DH30 117 aa10.5□□□□□ -0.73
C9orf3-202ENST00000297979 IGHV1-24A0A0C4DH33 117 aa10.5□□□□□ -0.73
C9orf3-202ENST00000297979 Q8N1Y9 231 aa10.5□□□□□ -0.73
C9orf3-202ENST00000297979 OR2K2Q8NGT1 345 aa10.5□□□□□ -0.73
C9orf3-202ENST00000297979 AP5S1Q9NUS5 200 aa10.5□□□□□ -0.73
C9orf3-202ENST00000297979 LOC389332A0A1B0GUA5 103 aa10.49□□□□□ -0.73
C9orf3-202ENST00000297979 IFI27P40305 119 aaPredicted RBP10.49□□□□□ -0.73
C9orf3-202ENST00000297979 KRTDAPP60985 99 aa10.49□□□□□ -0.73
C9orf3-202ENST00000297979 PMCHL1Q16048 86 aa10.49□□□□□ -0.73
C9orf3-202ENST00000297979 UQCR10Q9UDW1 63 aa10.49□□□□□ -0.73
C9orf3-202ENST00000297979 TAX1BP3O14907 124 aa10.49□□□□□ -0.73
C9orf3-202ENST00000297979 RBMY1A1P0DJD3 496 aaKnown RBP10.49□□□□□ -0.73
C9orf3-202ENST00000297979 RBMY1CP0DJD4 496 aa10.49□□□□□ -0.73
C9orf3-202ENST00000297979 RBMY1FQ15415 496 aaKnown RBP10.49□□□□□ -0.73
C9orf3-202ENST00000297979 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.49□□□□□ -0.73
C9orf3-202ENST00000297979 C9orf85Q96MD7 179 aa10.49□□□□□ -0.73
C9orf3-202ENST00000297979 AP1S3Q96PC3 154 aa10.49□□□□□ -0.73
C9orf3-202ENST00000297979 GAS8-AS1O95177 125 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 DPH3P1Q9H4G8 78 aa10.48□□□□□ -0.73
C9orf3-202ENST00000297979 CMC4P56277 68 aaPredicted RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 206 ms