RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 F2Z2F3 143 aa6.99□□□□□ -1.29
PDLIM5-223ENST00000627587 INSL3P51460 131 aa6.99□□□□□ -1.29
PDLIM5-223ENST00000627587 MUC4Q99102 2169 aa6.99□□□□□ -1.29
PDLIM5-223ENST00000627587 TRAV12-2A0A075B6T6 113 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 TRAV12-3A0A0B4J271 114 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 ZNF324O75467 553 aaPredicted RBP6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 APCSP02743 223 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 NDUFA6P56556 154 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 SLAQ13239 276 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 ANXA2RQ3ZCQ2 193 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 MUC21Q5SSG8 566 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 C9orf66Q5T8R8 295 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 GFI1BQ5VTD9 330 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 FAM159AQ6UWV7 190 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 STHQ8IWL8 128 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 C5orf52A6NGY3 159 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 S100A4P26447 101 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 SNRPEP62304 92 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 KCNS1Q96KK3 526 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 FAM110AQ9BQ89 295 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 SSBP4Q9BWG4 385 aaPredicted RBP6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 CNFNQ9BYD5 112 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 C19orf73Q9NVV2 129 aa6.98□□□□□ -1.29
PDLIM5-223ENST00000627587 MUC21A0A0G2JKD1 596 aa6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 MUC21A0A140T8X8 626 aa6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 CRXO43186 299 aaPredicted RBP6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 OR5AL1P0C617 328 aa6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 RBMY1A1P0DJD3 496 aaKnown RBP6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 RBMY1CP0DJD4 496 aa6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 ASIPP42127 132 aa6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 RBMY1FQ15415 496 aaKnown RBP6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 TWIST1Q15672 202 aa6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 CLUHP3Q96NS8 147 aa6.97□□□□□ -1.29
PDLIM5-223ENST00000627587 H3BVH4 76 aa6.96□□□□□ -1.29
PDLIM5-223ENST00000627587 SNAI2O43623 268 aa6.96□□□□□ -1.29
PDLIM5-223ENST00000627587 CD7P09564 240 aa6.96□□□□□ -1.29
PDLIM5-223ENST00000627587 NTF3P20783 257 aa6.96□□□□□ -1.29
PDLIM5-223ENST00000627587 FXYD7P58549 80 aa6.96□□□□□ -1.29
PDLIM5-223ENST00000627587 KIAA1644Q3SXP7 199 aa6.96□□□□□ -1.29
PDLIM5-223ENST00000627587 GATD1Q8NB37 220 aa6.96□□□□□ -1.29
PDLIM5-223ENST00000627587 MED14OSP0DP75 135 aa6.96□□□□□ -1.3
PDLIM5-223ENST00000627587 TDRG1Q3Y452 100 aa6.96□□□□□ -1.3
PDLIM5-223ENST00000627587 ZNF493Q6ZR52 646 aa6.96□□□□□ -1.3
PDLIM5-223ENST00000627587 WFDC10AQ9H1F0 79 aa6.96□□□□□ -1.3
PDLIM5-223ENST00000627587 MSRB1Q9NZV6 116 aa6.96□□□□□ -1.3
PDLIM5-223ENST00000627587 TP53TG3Q9ULZ0 132 aa6.96□□□□□ -1.3
PDLIM5-223ENST00000627587 IGHV1OR15-1A0A075B7D0 117 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 UBE2CO00762 179 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 GNRH2O43555 120 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 AMBPP02760 352 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 SRIP30626 198 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 NUTF2P61970 127 aaKnown RBP6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 CACNG7P62955 275 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 DNLZQ5SXM8 178 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 SPANXN1Q5VSR9 72 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 TRPT1Q86TN4 253 aaKnown RBP6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 OR10AG1Q8NH19 301 aa6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 TIMM8BQ9Y5J9 83 aaPredicted RBP6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 DYNC2H1Q8NCM8 4307 aaKnown RBP6.95□□□□□ -1.3
PDLIM5-223ENST00000627587 IFITM10A6NMD0 228 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 RNASE3P12724 160 aaKnown RBP6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 HOXA5P20719 270 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 LINC00310P59036 64 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 COA6Q5JTJ3 125 aaKnown RBP6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 GTSCR1Q86UQ5 136 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 PHLDA3Q9Y5J5 127 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 IGHV4-4A0A075B6R2 117 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 LOC102724200A0A096LPH7 203 aaPredicted RBP6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 SPRY2O43597 315 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 INSP01308 110 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 SMIM15Q7Z3B0 74 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 C20orf144Q9BQM9 153 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 TMEM191AQ9H0A3 160 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 SCRT2Q9NQ03 307 aa6.94□□□□□ -1.3
PDLIM5-223ENST00000627587 TRGV11A0A075B6L2 103 aa6.93□□□□□ -1.3
PDLIM5-223ENST00000627587 Q0VG73 95 aa6.93□□□□□ -1.3
PDLIM5-223ENST00000627587 OR10J3Q5JRS4 329 aa6.93□□□□□ -1.3
PDLIM5-223ENST00000627587 FAM104BQ5XKR9 115 aa6.93□□□□□ -1.3
PDLIM5-223ENST00000627587 Q8N1Y9 231 aa6.93□□□□□ -1.3
PDLIM5-223ENST00000627587 MUC7Q8TAX7 377 aa6.93□□□□□ -1.3
PDLIM5-223ENST00000627587 CBY3A6NI87 242 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 M0R381 172 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 NUPR1O60356 82 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 GIG44P09565 113 aaPredicted RBP6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 BAGE3Q86Y29 109 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 AMN1Q8IY45 258 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 ALKBH7Q9BT30 221 aaPredicted RBP6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 XCL2Q9UBD3 114 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 IGHV3-16A0A0C4DH30 117 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 PRM2P04554 102 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 HTN1P15515 57 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 S100A2P29034 98 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 PDZD11Q5EBL8 140 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 CASC10Q5T4H9 136 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 HIST3H2BBQ8N257 126 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 TMEM256Q8N2U0 113 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 C18orf32Q8TCD1 76 aa6.92□□□□□ -1.3
PDLIM5-223ENST00000627587 EVI2AP22794 236 aa6.91□□□□□ -1.3
PDLIM5-223ENST00000627587 RNF185Q96GF1 192 aa6.91□□□□□ -1.3
PDLIM5-223ENST00000627587 LINC01587Q99440 93 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms