RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 GFRA4Q9GZZ7 299 aa10.53□□□□□ -0.72
CD48-203ENST00000613788 DKK2Q9UBU2 259 aa10.53□□□□□ -0.72
CD48-203ENST00000613788 PHLDA3Q9Y5J5 127 aa10.53□□□□□ -0.72
CD48-203ENST00000613788 CXorf65A6NEN9 183 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 M0R2P5 195 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 SPINK4O60575 86 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 OR5AL1P0C617 328 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 IGLC6P0CF74 106 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 RHEBQ15382 184 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 FAM222AQ5U5X8 452 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 TPPP3Q9BW30 176 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 CTDSP1Q9GZU7 261 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 SCRT2Q9NQ03 307 aa10.52□□□□□ -0.73
CD48-203ENST00000613788 TRGV1A0A0A0MS02 117 aa10.51□□□□□ -0.73
CD48-203ENST00000613788 SNAI2O43623 268 aa10.51□□□□□ -0.73
CD48-203ENST00000613788 FOXA3P55318 350 aaPredicted RBP10.51□□□□□ -0.73
CD48-203ENST00000613788 SYT8Q8NBV8 401 aa10.51□□□□□ -0.73
CD48-203ENST00000613788 PTH2Q96A98 100 aa10.51□□□□□ -0.73
CD48-203ENST00000613788 C7orf77A4D0Y5 90 aa10.5□□□□□ -0.73
CD48-203ENST00000613788 ZNF876PQ49A33 203 aa10.5□□□□□ -0.73
CD48-203ENST00000613788 LYZL1Q6UWQ5 148 aa10.5□□□□□ -0.73
CD48-203ENST00000613788 GTSF1Q8WW33 167 aa10.5□□□□□ -0.73
CD48-203ENST00000613788 RASL10AQ92737 203 aa10.5□□□□□ -0.73
CD48-203ENST00000613788 NDUFAF3Q9BU61 184 aa10.5□□□□□ -0.73
CD48-203ENST00000613788 A0A087WWC5 75 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 SMIM27A0A1W2PRY6 76 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 HIGD1CA8MV81 97 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 PIK3CD-AS1Q5SR53 167 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 SPANXN1Q5VSR9 72 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 WDR73Q6P4I2 378 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 Q6ZTI0 123 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 ZFP82Q8N141 532 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 C11orf45Q8TAV5 145 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 RPS10P5Q9NQ39 176 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 TMEM242Q9NWH2 141 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 NAT8BQ9UHF3 227 aa10.49□□□□□ -0.73
CD48-203ENST00000613788 GAGE12BA1L429 117 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 GAGE7O76087 117 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 GAGE12FP0CL80 117 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 GAGE12GP0CL81 117 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 GAGE12IP0CL82 117 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 DEFB130BP0DP73 79 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 DEFB130AP0DP74 79 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 CTRLP40313 264 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 DAD1P61803 113 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 CACNG7P62955 275 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 BORCS7Q96B45 105 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 MRPL16Q9NX20 251 aaKnown RBP10.48□□□□□ -0.73
CD48-203ENST00000613788 CELA1Q9UNI1 258 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 TRGV2A0A075B6R0 118 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 M0R381 172 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 DMRTA1Q5VZB9 504 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 LINC00612Q8N6U2 182 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 OR10AG1Q8NH19 301 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 PGLYRP4Q96LB8 373 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 EDA2RQ9HAV5 297 aa10.48□□□□□ -0.73
CD48-203ENST00000613788 MUC21A0A0G2JKD1 596 aa10.47□□□□□ -0.73
CD48-203ENST00000613788 MUC21A0A140T8X8 626 aa10.47□□□□□ -0.73
CD48-203ENST00000613788 SSTP61278 116 aa10.47□□□□□ -0.73
CD48-203ENST00000613788 NUP35Q8NFH5 326 aa10.47□□□□□ -0.73
CD48-203ENST00000613788 C18orf15Q96N68 181 aa10.47□□□□□ -0.73
CD48-203ENST00000613788 IMMP2LQ96T52 175 aa10.47□□□□□ -0.73
CD48-203ENST00000613788 CNFNQ9BYD5 112 aa10.47□□□□□ -0.73
CD48-203ENST00000613788 COL7A1Q02388 2944 aa10.47□□□□□ -0.73
CD48-203ENST00000613788 IGHV4-4A0A075B6R2 117 aa10.46□□□□□ -0.74
CD48-203ENST00000613788 TENM3Q9P273 2699 aa10.45□□□□□ -0.74
CD48-203ENST00000613788 A0A1B0GUT8 65 aa10.45□□□□□ -0.74
CD48-203ENST00000613788 A8MWV9 139 aa10.45□□□□□ -0.74
CD48-203ENST00000613788 NXPH4O95158 308 aa10.45□□□□□ -0.74
CD48-203ENST00000613788 NTF3P20783 257 aa10.45□□□□□ -0.74
CD48-203ENST00000613788 TWIST1Q15672 202 aa10.45□□□□□ -0.74
CD48-203ENST00000613788 C12orf74Q32Q52 190 aa10.45□□□□□ -0.74
CD48-203ENST00000613788 KCNIP4Q6PIL6 250 aa10.45□□□□□ -0.74
CD48-203ENST00000613788 S100PP25815 95 aa10.44□□□□□ -0.74
CD48-203ENST00000613788 FAM3BP58499 235 aaPredicted RBP10.44□□□□□ -0.74
CD48-203ENST00000613788 NANOS2P60321 138 aaKnown RBP10.44□□□□□ -0.74
CD48-203ENST00000613788 RIGQ13278 110 aa10.44□□□□□ -0.74
CD48-203ENST00000613788 OR4C5Q8NGB2 326 aa10.44□□□□□ -0.74
CD48-203ENST00000613788 TRAV4A0A0B4J268 109 aa10.43□□□□□ -0.74
CD48-203ENST00000613788 CIDEAO60543 219 aa10.43□□□□□ -0.74
CD48-203ENST00000613788 TRGC1P0CF51 173 aa10.43□□□□□ -0.74
CD48-203ENST00000613788 RS1O15537 224 aa10.43□□□□□ -0.74
CD48-203ENST00000613788 ATP5G1P05496 136 aa10.43□□□□□ -0.74
CD48-203ENST00000613788 SMIM15Q7Z3B0 74 aa10.43□□□□□ -0.74
CD48-203ENST00000613788 BTF3L4Q96K17 158 aa10.43□□□□□ -0.74
CD48-203ENST00000613788 AP1S3Q96PC3 154 aa10.43□□□□□ -0.74
CD48-203ENST00000613788 MUC4Q99102 2169 aa10.42□□□□□ -0.74
CD48-203ENST00000613788 A0A1B0GW15 77 aa10.42□□□□□ -0.74
CD48-203ENST00000613788 SMIM17P0DL12 118 aa10.42□□□□□ -0.74
CD48-203ENST00000613788 CFAP126Q5VTH2 177 aa10.42□□□□□ -0.74
CD48-203ENST00000613788 ATRAIDQ6UW56 229 aa10.42□□□□□ -0.74
CD48-203ENST00000613788 Q6ZTC4 211 aa10.42□□□□□ -0.74
CD48-203ENST00000613788 JPT2Q9H910 190 aa10.42□□□□□ -0.74
CD48-203ENST00000613788 MSRB1Q9NZV6 116 aa10.42□□□□□ -0.74
CD48-203ENST00000613788 TRAV9-1A0A075B6T8 112 aa10.41□□□□□ -0.74
CD48-203ENST00000613788 ZFP2Q6ZN57 461 aa10.41□□□□□ -0.74
CD48-203ENST00000613788 POM121L12Q8N7R1 296 aa10.41□□□□□ -0.74
CD48-203ENST00000613788 RHODO00212 210 aa10.4□□□□□ -0.74
CD48-203ENST00000613788 IGHV3-53P01767 116 aa10.4□□□□□ -0.74
CD48-203ENST00000613788 S100A8P05109 93 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms