RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 SAP25Q8TEE9 199 aa3.92□□□□□ -1.78
VPS13D-213ENST00000613099 I3L3M4 83 aa3.92□□□□□ -1.78
VPS13D-213ENST00000613099 FOXE3Q13461 319 aa3.92□□□□□ -1.78
VPS13D-213ENST00000613099 JMJD1CQ15652 2540 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 TRBV12-3P01733 135 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 DPH3Q96FX2 82 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 IGHV1-45A0A0A0MS14 117 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 FRMD6-AS1P0C7T7 363 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 SDIM1Q6ZPB5 146 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 NDUFS5O43920 106 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 ZNF581Q9P0T4 197 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 DEFB127Q9H1M4 99 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 PRR25Q96S07 402 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 MRPS12O15235 138 aaKnown RBP3.91□□□□□ -1.78
VPS13D-213ENST00000613099 UBE2AP49459 152 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 C5orf38Q86SI9 138 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 ZNF580Q9UK33 172 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 C4orf26Q17RF5 130 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 PTPRBP23467 1997 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 PF4P02776 101 aa3.91□□□□□ -1.78
VPS13D-213ENST00000613099 Q6ZQT7 251 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 LEAP2Q969E1 77 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 A0A0U1RRA0 63 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 IGKV1-39P01597 117 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 IGKV1D-39P04432 117 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 TLN2Q9Y4G6 2542 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 NDUFA4L2Q9NRX3 87 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 TRBV7-1A0A0A6YYK4 115 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 LINC00473A8K010 186 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 TMEM256-PLSCR3K7ERE1 68 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 LINC00310P59036 64 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 THAP8Q8NA92 274 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 ERCC8Q13216 396 aa3.9□□□□□ -1.78
VPS13D-213ENST00000613099 PRR19A6NJB7 356 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 NCOA6Q14686 2063 aaPredicted RBP3.9□□□□□ -1.79
VPS13D-213ENST00000613099 INS-IGF2F8WCM5 200 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 RPL36AP83881 106 aaKnown RBP3.9□□□□□ -1.79
VPS13D-213ENST00000613099 NFE4Q86UQ8 179 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 LYPD6Q86Y78 171 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 KIR2DL5BQ8NHK3 375 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 RPL36ALQ969Q0 106 aaKnown RBP3.9□□□□□ -1.79
VPS13D-213ENST00000613099 BLCAPP62952 87 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 PCNX3Q9H6A9 2034 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 ADARB2-AS1A8MUL3 147 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 COX7A2LO14548 114 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 FAM167A-AS1Q96KT0 104 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 A0A1B0GW54 56 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 FAM216BQ8N7L0 139 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 MBD6Q96DN6 1003 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 TOMM7Q9P0U1 55 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 TMEM167AQ8TBQ9 72 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 CLEC2BQ92478 149 aa3.9□□□□□ -1.79
VPS13D-213ENST00000613099 TRAV23DV6A0A075B6W5 121 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 Q6JHZ5 121 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 RNF144BQ7Z419 303 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 DCTN5Q9BTE1 182 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 IGKV3D-11A0A0A0MRZ8 115 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 KLHL30-AS1Q8NEE0 82 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 EIF4EBP1Q13541 118 aaPredicted RBP3.89□□□□□ -1.79
VPS13D-213ENST00000613099 UBE2D3P61077 147 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 UBE2D2P62837 147 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 ITLN1Q8WWA0 313 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 C9orf85Q96MD7 179 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 CFHR4Q92496 578 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 PYGO1Q9Y3Y4 419 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 TRAV7A0A075B6U4 112 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 DIAPH2-AS1Q14236 149 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 IGKV3D-15A0A087WSY6 115 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 C11orf86A6NJI1 115 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 ZNF876PQ49A33 203 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 ASPHD1Q5U4P2 390 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 FAM222AQ5U5X8 452 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 IGHV3-33P01772 117 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 SUMO4Q6EEV6 95 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 Q6ZT83 130 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 C11orf44Q8N8P7 122 aa3.89□□□□□ -1.79
VPS13D-213ENST00000613099 SDHAF1A6NFY7 115 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 OXLD1Q5BKU9 147 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 SRXN1Q9BYN0 137 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 TRAV26-2A0A0B4J265 109 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 H7C423 109 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 PMS2CLQ68D20 193 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 TIMM17AQ99595 171 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 C19orf71A6NCJ1 209 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 C16orf97H3BN30 126 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 HOXD3P31249 432 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-213ENST00000613099 ZNF524Q96C55 264 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 IGHV3-72A0A0B4J1Y9 119 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 KAAG1Q9UBP8 84 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 IGHV1OR21-1A0A087WYE8 117 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 LINC01587Q99440 93 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 OPRPNQ99935 248 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-213ENST00000613099 DAZ2Q13117 558 aaKnown RBP3.88□□□□□ -1.79
VPS13D-213ENST00000613099 KHDC1LQ5JSQ8 128 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 GFRALQ6UXV0 394 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 TTTY13Q9BZ97 58 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 NDUFB1O75438 58 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 DPM3Q9P2X0 92 aa3.88□□□□□ -1.79
VPS13D-213ENST00000613099 FAM223BA6NKX1 122 aa3.87□□□□□ -1.79
VPS13D-213ENST00000613099 STHQ8IWL8 128 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms