RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 TRGV3P03979 118 aa8.16□□□□□ -1.1
LIG1-220ENST00000601091 SCGB1C2P0DMR2 95 aa8.16□□□□□ -1.1
LIG1-220ENST00000601091 IFI27P40305 119 aaPredicted RBP8.16□□□□□ -1.1
LIG1-220ENST00000601091 SMG1Q96Q15 3661 aaKnown RBP8.16□□□□□ -1.1
LIG1-220ENST00000601091 A8MWV9 139 aa8.16□□□□□ -1.1
LIG1-220ENST00000601091 LEPP41159 167 aa8.16□□□□□ -1.1
LIG1-220ENST00000601091 SCGB1D4Q6XE38 83 aa8.16□□□□□ -1.1
LIG1-220ENST00000601091 SPANXCQ9NY87 97 aa8.16□□□□□ -1.1
LIG1-220ENST00000601091 K7ENP7 123 aa8.15□□□□□ -1.1
LIG1-220ENST00000601091 DUSP14O95147 198 aaKnown RBP8.15□□□□□ -1.1
LIG1-220ENST00000601091 IGKV1-17P01599 117 aa8.15□□□□□ -1.1
LIG1-220ENST00000601091 LINC01561Q8N1V8 128 aa8.15□□□□□ -1.1
LIG1-220ENST00000601091 TEX22C9J3V5 150 aa8.15□□□□□ -1.1
LIG1-220ENST00000601091 IGLV1-47P01700 117 aa8.15□□□□□ -1.1
LIG1-220ENST00000601091 C17orf77Q96MU5 243 aa8.15□□□□□ -1.1
LIG1-220ENST00000601091 IGHV3OR16-10A0A075B7F0 116 aa8.15□□□□□ -1.11
LIG1-220ENST00000601091 UQCRQO14949 82 aa8.15□□□□□ -1.11
LIG1-220ENST00000601091 NCR2O95944 276 aa8.15□□□□□ -1.11
LIG1-220ENST00000601091 CRYGDP07320 174 aa8.15□□□□□ -1.11
LIG1-220ENST00000601091 VPREB1P12018 145 aa8.15□□□□□ -1.11
LIG1-220ENST00000601091 IGFL4Q6B9Z1 124 aa8.15□□□□□ -1.11
LIG1-220ENST00000601091 FOXC2Q99958 501 aa8.15□□□□□ -1.11
LIG1-220ENST00000601091 I3L2K1 104 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 CRLF1O75462 422 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 COX8AP10176 69 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 hADV29S1A0JD25 119 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 S100A7L2Q5SY68 101 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 FAM104BQ5XKR9 115 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 C8orf49Q96NF6 230 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 KLK15Q9H2R5 256 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 TET2Q6N021 2002 aaPredicted RBP8.14□□□□□ -1.11
LIG1-220ENST00000601091 K7EMI3 77 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 M0R381 172 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 ZNF56Q15929 161 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 SCRT2Q9NQ03 307 aa8.14□□□□□ -1.11
LIG1-220ENST00000601091 CDSNQ15517 529 aa8.13□□□□□ -1.11
LIG1-220ENST00000601091 GTSF1Q8WW33 167 aa8.13□□□□□ -1.11
LIG1-220ENST00000601091 LY6EQ16553 131 aa8.13□□□□□ -1.11
LIG1-220ENST00000601091 GDF5OSQ5U4N7 250 aa8.13□□□□□ -1.11
LIG1-220ENST00000601091 PRR25Q96S07 402 aa8.13□□□□□ -1.11
LIG1-220ENST00000601091 TRAV8-4A0A0B4J246 113 aa8.13□□□□□ -1.11
LIG1-220ENST00000601091 K7EIM0 57 aa8.13□□□□□ -1.11
LIG1-220ENST00000601091 MBD6Q96DN6 1003 aa8.13□□□□□ -1.11
LIG1-220ENST00000601091 FHL3Q13643 280 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 HIST1H4GQ99525 98 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 SMKR1H3BMG3 65 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 C9orf85Q96MD7 179 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 MDFICQ9P1T7 246 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 TP53TG1Q9Y2A0 90 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 MAP1AP78559 2803 aaPredicted RBP8.12□□□□□ -1.11
LIG1-220ENST00000601091 DSCAMO60469 2012 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 IGFBPL1Q8WX77 278 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 PRSS22Q9GZN4 317 aa8.12□□□□□ -1.11
LIG1-220ENST00000601091 EFNA4P52798 201 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 NFE4Q86UQ8 179 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 TLN1Q9Y490 2541 aaKnown RBP8.11□□□□□ -1.11
LIG1-220ENST00000601091 C19orf71A6NCJ1 209 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 ASIPP42127 132 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 PAX8Q06710 450 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 LINC01559Q495D7 138 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 TEN1Q86WV5 123 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 CEND1Q8N111 149 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 OR11H6Q8NGC7 330 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 MLST8Q9BVC4 326 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 MUC6Q6W4X9 2439 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 TRGV11A0A075B6L2 103 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 CD164Q04900 197 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 LINC00482Q8N8I6 264 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 C11orf45Q8TAV5 145 aa8.11□□□□□ -1.11
LIG1-220ENST00000601091 A0A1B0GXF2 115 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 MRPL51Q4U2R6 128 aaKnown RBP8.1□□□□□ -1.11
LIG1-220ENST00000601091 LINC00322Q6ZN03 302 aaPredicted RBP8.1□□□□□ -1.11
LIG1-220ENST00000601091 ATP6V0E2Q8NHE4 81 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 SCGB3A1Q96QR1 104 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 LINC00527Q9UJ94 153 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 ERCC8Q13216 396 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 DPH3Q96FX2 82 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 ZNF747Q9BV97 191 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 TNRC6BQ9UPQ9 1833 aaKnown RBP8.1□□□□□ -1.11
LIG1-220ENST00000601091 PTPRQQ9UMZ3 2332 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 TRBV7-1A0A0A6YYK4 115 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 PPP1R17O96001 155 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 IGKCP01834 107 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 GRNP28799 593 aaKnown RBP8.1□□□□□ -1.11
LIG1-220ENST00000601091 FAM120AOSQ5T036 256 aa8.1□□□□□ -1.11
LIG1-220ENST00000601091 CSMD1Q96PZ7 3565 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 DMXL1Q9Y485 3027 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 SPG11Q96JI7 2443 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 SAA4P35542 130 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 ZNF493Q6ZR52 646 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 TRAV41A0A0B4J266 112 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 TRAV21A0A0B4J279 112 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 IGLL5B9A064 214 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 IGHV3-11P01762 117 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 FXYD2P54710 66 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 C2orf70A6NJV1 201 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 UBE2E1P51965 193 aa8.09□□□□□ -1.11
LIG1-220ENST00000601091 C2orf91Q6ZV80 131 aa8.08□□□□□ -1.12
LIG1-220ENST00000601091 Q8NA96 180 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms