RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SIRPDQ9H106 197 aa15.9■□□□□ 0.14
UPF1-207ENST00000599848 VWA8A3KMH1 1905 aa15.9■□□□□ 0.14
UPF1-207ENST00000599848 I3L2K1 104 aa15.9■□□□□ 0.14
UPF1-207ENST00000599848 HLA-DMBP28068 263 aa15.9■□□□□ 0.14
UPF1-207ENST00000599848 PCNX1Q96RV3 2341 aa15.9■□□□□ 0.14
UPF1-207ENST00000599848 TRBV7-3A0A075B6L6 115 aa15.9■□□□□ 0.14
UPF1-207ENST00000599848 C5orf38Q86SI9 138 aa15.9■□□□□ 0.14
UPF1-207ENST00000599848 Q9H8V8 135 aa15.9■□□□□ 0.14
UPF1-207ENST00000599848 ZFP36P26651 326 aaKnown RBP15.9■□□□□ 0.14
UPF1-207ENST00000599848 NPYP01303 97 aa15.89■□□□□ 0.13
UPF1-207ENST00000599848 RSPO1Q2MKA7 263 aaPredicted RBP15.89■□□□□ 0.13
UPF1-207ENST00000599848 FGF6P10767 208 aa15.89■□□□□ 0.13
UPF1-207ENST00000599848 EGR2P11161 476 aaPredicted RBP15.89■□□□□ 0.13
UPF1-207ENST00000599848 MPV17L2Q567V2 206 aa15.89■□□□□ 0.13
UPF1-207ENST00000599848 MUC6Q6W4X9 2439 aa15.88■□□□□ 0.13
UPF1-207ENST00000599848 TRBV10-1A0A0K0K1A3 114 aa15.88■□□□□ 0.13
UPF1-207ENST00000599848 LYRM9A8MSI8 78 aa15.88■□□□□ 0.13
UPF1-207ENST00000599848 ZNF124Q15973 351 aa15.88■□□□□ 0.13
UPF1-207ENST00000599848 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.88■□□□□ 0.13
UPF1-207ENST00000599848 IGKV2-29A2NJV5 120 aaPredicted RBP15.88■□□□□ 0.13
UPF1-207ENST00000599848 NRGNQ92686 78 aa15.88■□□□□ 0.13
UPF1-207ENST00000599848 V9GYV3 84 aa15.88■□□□□ 0.13
UPF1-207ENST00000599848 SPRY4Q9C004 299 aa15.88■□□□□ 0.13
UPF1-207ENST00000599848 CTSGP08311 255 aa15.87■□□□□ 0.13
UPF1-207ENST00000599848 MRPL35Q9NZE8 188 aaKnown RBP15.87■□□□□ 0.13
UPF1-207ENST00000599848 K7EIM0 57 aa15.87■□□□□ 0.13
UPF1-207ENST00000599848 FER1L5A0AVI2 2057 aa15.87■□□□□ 0.13
UPF1-207ENST00000599848 PCP4P48539 62 aa15.87■□□□□ 0.13
UPF1-207ENST00000599848 DEFB105AQ8NG35 78 aa15.87■□□□□ 0.13
UPF1-207ENST00000599848 OPRPNQ99935 248 aaPredicted RBP15.87■□□□□ 0.13
UPF1-207ENST00000599848 COL4A6Q14031 1691 aa15.87■□□□□ 0.13
UPF1-207ENST00000599848 YLPM1P49750 1951 aaKnown RBP15.86■□□□□ 0.13
UPF1-207ENST00000599848 HIST2H2BCQ6DN03 193 aa15.86■□□□□ 0.13
UPF1-207ENST00000599848 NFE4Q86UQ8 179 aa15.86■□□□□ 0.13
UPF1-207ENST00000599848 COX7B2Q8TF08 81 aa15.86■□□□□ 0.13
UPF1-207ENST00000599848 PPDPFLQ8WWR9 84 aa15.86■□□□□ 0.13
UPF1-207ENST00000599848 MED12Q93074 2177 aa15.86■□□□□ 0.13
UPF1-207ENST00000599848 CHKB-CPT1BH3BT56 60 aa15.85■□□□□ 0.13
UPF1-207ENST00000599848 SIVA1O15304 175 aa15.85■□□□□ 0.13
UPF1-207ENST00000599848 DOCK10Q96BY6 2186 aa15.84■□□□□ 0.13
UPF1-207ENST00000599848 FAM208BQ5VWN6 2430 aa15.84■□□□□ 0.13
UPF1-207ENST00000599848 FSTL3O95633 263 aa15.84■□□□□ 0.13
UPF1-207ENST00000599848 SPAG11BQ08648 103 aa15.84■□□□□ 0.13
UPF1-207ENST00000599848 SPANXCQ9NY87 97 aa15.84■□□□□ 0.13
UPF1-207ENST00000599848 C9orf47Q6ZRZ4 202 aa15.84■□□□□ 0.13
UPF1-207ENST00000599848 ZNF407Q9C0G0 2248 aa15.83■□□□□ 0.13
UPF1-207ENST00000599848 CCL25O15444 150 aa15.83■□□□□ 0.13
UPF1-207ENST00000599848 KRTAP27-1Q3LI81 207 aa15.83■□□□□ 0.12
UPF1-207ENST00000599848 HIVEP2P31629 2446 aa15.83■□□□□ 0.12
UPF1-207ENST00000599848 IGHV4-31P0DP07 118 aa15.83■□□□□ 0.12
UPF1-207ENST00000599848 PRR31Q5SQ13 230 aa15.83■□□□□ 0.12
UPF1-207ENST00000599848 Q6YL49 198 aa15.83■□□□□ 0.12
UPF1-207ENST00000599848 SIP14410 1827 aa15.83■□□□□ 0.12
UPF1-207ENST00000599848 MORN5Q5VZ52 161 aa15.82■□□□□ 0.12
UPF1-207ENST00000599848 DOCK8Q8NF50 2099 aa15.82■□□□□ 0.12
UPF1-207ENST00000599848 IGLV1-47P01700 117 aa15.82■□□□□ 0.12
UPF1-207ENST00000599848 CARD19Q96LW7 228 aa15.82■□□□□ 0.12
UPF1-207ENST00000599848 LINC01548A6NM66 108 aa15.82■□□□□ 0.12
UPF1-207ENST00000599848 MP68P56378 58 aa15.82■□□□□ 0.12
UPF1-207ENST00000599848 IGLV10-54A0A075B6I4 117 aa15.81■□□□□ 0.12
UPF1-207ENST00000599848 PLXNA4Q9HCM2 1894 aa15.81■□□□□ 0.12
UPF1-207ENST00000599848 C7orf33Q8WU49 177 aa15.81■□□□□ 0.12
UPF1-207ENST00000599848 Q8NA96 180 aa15.81■□□□□ 0.12
UPF1-207ENST00000599848 MALRD1Q5VYJ5 2156 aa15.8■□□□□ 0.12
UPF1-207ENST00000599848 LGALS9O00182 355 aa15.8■□□□□ 0.12
UPF1-207ENST00000599848 VSIG2Q96IQ7 327 aa15.8■□□□□ 0.12
UPF1-207ENST00000599848 CYYR1Q96J86 154 aa15.8■□□□□ 0.12
UPF1-207ENST00000599848 KIAA2026Q5HYC2 2103 aa15.8■□□□□ 0.12
UPF1-207ENST00000599848 ZNF843Q8N446 348 aa15.8■□□□□ 0.12
UPF1-207ENST00000599848 WI2-2373I1.2A0A1W2PRP0 233 aa15.8■□□□□ 0.12
UPF1-207ENST00000599848 NOTCH3Q9UM47 2321 aa15.79■□□□□ 0.12
UPF1-207ENST00000599848 COX8AP10176 69 aa15.79■□□□□ 0.12
UPF1-207ENST00000599848 KLK12Q9UKR0 248 aa15.79■□□□□ 0.12
UPF1-207ENST00000599848 SND1-IT1Q9HBX3 110 aa15.79■□□□□ 0.12
UPF1-207ENST00000599848 INAFM1C9JVW0 142 aa15.79■□□□□ 0.12
UPF1-207ENST00000599848 IGKV1-17P01599 117 aa15.79■□□□□ 0.12
UPF1-207ENST00000599848 Q8N7P7 452 aa15.79■□□□□ 0.12
UPF1-207ENST00000599848 WDR81Q562E7 1941 aa15.78■□□□□ 0.12
UPF1-207ENST00000599848 Q6ZSR3 168 aa15.78■□□□□ 0.12
UPF1-207ENST00000599848 NAA38Q9BRA0 125 aaKnown RBP15.78■□□□□ 0.12
UPF1-207ENST00000599848 ODF3Q96PU9 254 aa15.78■□□□□ 0.12
UPF1-207ENST00000599848 MIFP14174 115 aa15.78■□□□□ 0.12
UPF1-207ENST00000599848 RNASE13Q5GAN3 156 aaKnown RBP15.78■□□□□ 0.12
UPF1-207ENST00000599848 PTPRQQ9UMZ3 2332 aa15.78■□□□□ 0.12
UPF1-207ENST00000599848 TRACP01848 142 aa15.77■□□□□ 0.12
UPF1-207ENST00000599848 TMEM61Q8N0U2 210 aa15.77■□□□□ 0.12
UPF1-207ENST00000599848 DIRC1Q969H9 104 aa15.77■□□□□ 0.11
UPF1-207ENST00000599848 ACYP1P07311 99 aa15.77■□□□□ 0.11
UPF1-207ENST00000599848 F8W1H4 67 aa15.76■□□□□ 0.11
UPF1-207ENST00000599848 SEM1Q6ZVN7 128 aa15.76■□□□□ 0.11
UPF1-207ENST00000599848 Q8N1Y9 231 aa15.76■□□□□ 0.11
UPF1-207ENST00000599848 FRMPD3Q5JV73 1810 aa15.76■□□□□ 0.11
UPF1-207ENST00000599848 TRAV10A0A0B4J240 114 aa15.76■□□□□ 0.11
UPF1-207ENST00000599848 C9orf153Q5TBE3 101 aa15.76■□□□□ 0.11
UPF1-207ENST00000599848 CEND1Q8N111 149 aa15.76■□□□□ 0.11
UPF1-207ENST00000599848 MAP6D1Q9H9H5 199 aa15.75■□□□□ 0.11
UPF1-207ENST00000599848 PCNX2A6NKB5 2137 aa15.75■□□□□ 0.11
UPF1-207ENST00000599848 C17orf77Q96MU5 243 aa15.75■□□□□ 0.11
UPF1-207ENST00000599848 A0A0J9YX75 114 aa15.75■□□□□ 0.11
UPF1-207ENST00000599848 CFC1BP0CG36 223 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms