RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 ATP6V0BQ99437 205 aa12.48□□□□□ -0.41
LIG1-206ENST00000594067 OVOL1O14753 267 aa12.47□□□□□ -0.41
LIG1-206ENST00000594067 SCGB1A1P11684 91 aa12.47□□□□□ -0.41
LIG1-206ENST00000594067 RNASE4P34096 147 aaKnown RBP12.47□□□□□ -0.41
LIG1-206ENST00000594067 PRO0461Q9UI25 63 aa12.47□□□□□ -0.41
LIG1-206ENST00000594067 PHLDA3Q9Y5J5 127 aa12.47□□□□□ -0.41
LIG1-206ENST00000594067 MGPP08493 103 aa12.47□□□□□ -0.41
LIG1-206ENST00000594067 IGHV4-38-2P0DP08 117 aa12.47□□□□□ -0.41
LIG1-206ENST00000594067 ASIPP42127 132 aa12.47□□□□□ -0.41
LIG1-206ENST00000594067 MYMXA0A1B0GTQ4 84 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 LINC01619G3V211 115 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 J3QR89 54 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 GNRH2O43555 120 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 SUMO2P61956 95 aaKnown RBP12.46□□□□□ -0.41
LIG1-206ENST00000594067 MTURNQ8N3F0 131 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 ABCA2Q9BZC7 2435 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 IGHV4-61A0A0C4DH41 118 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 GAGE13Q4V321 117 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 SCGB3A1Q96QR1 104 aa12.46□□□□□ -0.41
LIG1-206ENST00000594067 OR11H12B2RN74 326 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 PF4V1P10720 104 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 NEXN-AS1Q8NBZ9 246 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 OR11H1Q8NG94 326 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 OR11H2Q8NH07 326 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 SPATA25Q9BR10 227 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 DPH3P1Q9H4G8 78 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 TOMM6Q96B49 74 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 MORN3Q6PF18 240 aaPredicted RBP12.45□□□□□ -0.42
LIG1-206ENST00000594067 Q6ZS46 218 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 CYSLTR1Q9Y271 337 aa12.45□□□□□ -0.42
LIG1-206ENST00000594067 H3BUX3 64 aa12.44□□□□□ -0.42
LIG1-206ENST00000594067 SRD5A1P18405 259 aa12.44□□□□□ -0.42
LIG1-206ENST00000594067 BLCAPP62952 87 aa12.44□□□□□ -0.42
LIG1-206ENST00000594067 ORMDL2Q53FV1 153 aa12.44□□□□□ -0.42
LIG1-206ENST00000594067 SPTAN1Q13813 2472 aaKnown RBP12.44□□□□□ -0.42
LIG1-206ENST00000594067 LGALS1P09382 135 aaKnown RBP12.44□□□□□ -0.42
LIG1-206ENST00000594067 GNLYP22749 145 aa12.44□□□□□ -0.42
LIG1-206ENST00000594067 NCOR2Q9Y618 2525 aa12.43□□□□□ -0.42
LIG1-206ENST00000594067 INSL3P51460 131 aa12.43□□□□□ -0.42
LIG1-206ENST00000594067 RHPN1-AS1Q9BWJ2 59 aa12.43□□□□□ -0.42
LIG1-206ENST00000594067 RNF223E7ERA6 249 aa12.43□□□□□ -0.42
LIG1-206ENST00000594067 FAM19A4Q96LR4 140 aa12.43□□□□□ -0.42
LIG1-206ENST00000594067 C20orf78Q9BR46 151 aa12.43□□□□□ -0.42
LIG1-206ENST00000594067 SPTBN4Q9H254 2564 aa12.42□□□□□ -0.42
LIG1-206ENST00000594067 CHD8Q9HCK8 2581 aa12.42□□□□□ -0.42
LIG1-206ENST00000594067 HOXA3O43365 443 aaPredicted RBP12.42□□□□□ -0.42
LIG1-206ENST00000594067 IGHG2P01859 326 aa12.42□□□□□ -0.42
LIG1-206ENST00000594067 RNASE3P12724 160 aaKnown RBP12.42□□□□□ -0.42
LIG1-206ENST00000594067 EDN2P20800 178 aa12.42□□□□□ -0.42
LIG1-206ENST00000594067 USMG5Q96IX5 58 aa12.42□□□□□ -0.42
LIG1-206ENST00000594067 SLC25A16P16260 332 aa12.42□□□□□ -0.42
LIG1-206ENST00000594067 C2orf66Q6UXQ4 117 aa12.41□□□□□ -0.42
LIG1-206ENST00000594067 WFDC12Q8WWY7 111 aa12.41□□□□□ -0.42
LIG1-206ENST00000594067 PIMREGQ9BSJ6 248 aa12.41□□□□□ -0.42
LIG1-206ENST00000594067 DEFB104AQ8WTQ1 72 aa12.41□□□□□ -0.42
LIG1-206ENST00000594067 BAALCQ8WXS3 180 aa12.41□□□□□ -0.42
LIG1-206ENST00000594067 A6NDX4 124 aa12.4□□□□□ -0.42
LIG1-206ENST00000594067 CLEC2AQ6UVW9 174 aa12.4□□□□□ -0.42
LIG1-206ENST00000594067 PRADC1Q9BSG0 188 aa12.4□□□□□ -0.42
LIG1-206ENST00000594067 PGPEP1Q9NXJ5 209 aa12.4□□□□□ -0.42
LIG1-206ENST00000594067 PRSS29PA6NIE9 313 aa12.39□□□□□ -0.43
LIG1-206ENST00000594067 H3BUA1 57 aa12.39□□□□□ -0.43
LIG1-206ENST00000594067 NDUFS8O00217 210 aa12.39□□□□□ -0.43
LIG1-206ENST00000594067 COL12A1Q99715 3063 aa12.38□□□□□ -0.43
LIG1-206ENST00000594067 MED14OSP0DP75 135 aa12.38□□□□□ -0.43
LIG1-206ENST00000594067 APRG1Q8IVJ8 170 aa12.38□□□□□ -0.43
LIG1-206ENST00000594067 C10orf105Q8TEF2 133 aa12.38□□□□□ -0.43
LIG1-206ENST00000594067 JPT2Q9H910 190 aa12.38□□□□□ -0.43
LIG1-206ENST00000594067 COX6B1P14854 86 aa12.37□□□□□ -0.43
LIG1-206ENST00000594067 SMCPP49901 116 aaPredicted RBP12.37□□□□□ -0.43
LIG1-206ENST00000594067 PLEKHB2Q96CS7 222 aa12.37□□□□□ -0.43
LIG1-206ENST00000594067 DAZ1Q9NQZ3 744 aaKnown RBP12.37□□□□□ -0.43
LIG1-206ENST00000594067 ZNF815PA8K554 130 aa12.37□□□□□ -0.43
LIG1-206ENST00000594067 SCGB2A2Q13296 93 aa12.37□□□□□ -0.43
LIG1-206ENST00000594067 CCL19Q99731 98 aa12.37□□□□□ -0.43
LIG1-206ENST00000594067 MRPL16Q9NX20 251 aaKnown RBP12.37□□□□□ -0.43
LIG1-206ENST00000594067 LINC01549A6NIU2 74 aa12.36□□□□□ -0.43
LIG1-206ENST00000594067 CFAP126Q5VTH2 177 aa12.36□□□□□ -0.43
LIG1-206ENST00000594067 IGHV4-30-2A0A087WSY4 118 aa12.36□□□□□ -0.43
LIG1-206ENST00000594067 BRI3O95415 125 aa12.36□□□□□ -0.43
LIG1-206ENST00000594067 UBE2D1P51668 147 aa12.36□□□□□ -0.43
LIG1-206ENST00000594067 TMEM95Q3KNT9 176 aa12.36□□□□□ -0.43
LIG1-206ENST00000594067 ITPR1Q14643 2758 aa12.36□□□□□ -0.43
LIG1-206ENST00000594067 DUSP14O95147 198 aaKnown RBP12.35□□□□□ -0.43
LIG1-206ENST00000594067 APOMO95445 188 aa12.35□□□□□ -0.43
LIG1-206ENST00000594067 IGLV1-40P01703 118 aa12.35□□□□□ -0.43
LIG1-206ENST00000594067 CRYGDP07320 174 aa12.35□□□□□ -0.43
LIG1-206ENST00000594067 FOXI1Q12951 378 aa12.35□□□□□ -0.43
LIG1-206ENST00000594067 KLHL30-AS1Q8NEE0 82 aa12.35□□□□□ -0.43
LIG1-206ENST00000594067 LINC00315P59091 139 aa12.35□□□□□ -0.43
LIG1-206ENST00000594067 SCGB1D4Q6XE38 83 aa12.35□□□□□ -0.43
LIG1-206ENST00000594067 KIF25-AS1Q9Y6Z4 181 aa12.35□□□□□ -0.43
LIG1-206ENST00000594067 FAM159AQ6UWV7 190 aa12.34□□□□□ -0.43
LIG1-206ENST00000594067 MUC4Q99102 2169 aa12.34□□□□□ -0.43
LIG1-206ENST00000594067 A0A087WWL8 130 aa12.34□□□□□ -0.43
LIG1-206ENST00000594067 TMEM238LA0A1B0GVL6 79 aa12.34□□□□□ -0.43
LIG1-206ENST00000594067 A6NJY4 79 aa12.34□□□□□ -0.43
LIG1-206ENST00000594067 KLLNB2CW77 178 aa12.34□□□□□ -0.43
LIG1-206ENST00000594067 ATP5J2P56134 94 aa12.34□□□□□ -0.43
LIG1-206ENST00000594067 SRSF9Q13242 221 aaKnown RBP eCLIP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms