RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 HSPE1P61604 102 aaKnown RBP3.28□□□□□ -1.88
SS18-223ENST00000583595 GNG5P63218 68 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 FAM53BQ14153 422 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 CST6Q15828 149 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 ANKRD29Q8N6D5 301 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 Q8N7P7 452 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 C15orf53Q8NAA6 179 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 GATD1Q8NB37 220 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 ZNF414Q96IQ9 312 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 LINC01600Q96MT4 127 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 CHCHD2Q9Y6H1 151 aaPredicted RBP3.28□□□□□ -1.88
SS18-223ENST00000583595 DNAH12Q6ZR08 3092 aa3.28□□□□□ -1.88
SS18-223ENST00000583595 NUMA1Q14980 2115 aa3.28□□□□□ -1.89
SS18-223ENST00000583595 VCANP13611 3396 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 CDH23Q9H251 3354 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 TRBV25-1A0A075B6N4 114 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 TRBV6-6A0A0A6YYG2 114 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 IGHV1OR15-9A0A0B4J2B8 117 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 IGKV3D-20A0A0C4DH25 116 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 MYMXA0A1B0GTQ4 84 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 HIGD1CA8MV81 97 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 UPK2O00526 184 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 LY6G6DO95868 133 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 NPYP01303 97 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 CRYGAP11844 174 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 DSCR10P59022 87 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 UBE2D3P61077 147 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 TMEM258P61165 79 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 UBE2D2P62837 147 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 CLLU1OSQ5K130 101 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 Q6ZR03 302 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 Q6ZR54 194 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 NTM-AS1Q6ZSK4 140 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 PDPNQ86YL7 162 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 OR8A1Q8NGG7 326 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 FAM57AQ8TBR7 257 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 MYOZ3Q8TDC0 251 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 SRSF12Q8WXF0 261 aaKnown RBP3.27□□□□□ -1.89
SS18-223ENST00000583595 IFI27L1Q96BM0 104 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 ZNF492Q9P255 531 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 ZNF706Q9Y5V0 76 aaPredicted RBP3.27□□□□□ -1.89
SS18-223ENST00000583595 BDP1A6H8Y1 2624 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 ARHGAP21Q5T5U3 1957 aa3.27□□□□□ -1.89
SS18-223ENST00000583595 LAMA2P24043 3122 aaKnown RBP3.26□□□□□ -1.89
SS18-223ENST00000583595 CHD9Q3L8U1 2897 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 TRBV7-3A0A075B6L6 115 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 TRAV8-3A0A0A6YYJ7 113 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 IGHV3-72A0A0B4J1Y9 119 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 TRACP01848 142 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 HBDP02042 147 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 STATHP02808 62 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 LGALS1P09382 135 aaKnown RBP3.26□□□□□ -1.89
SS18-223ENST00000583595 CD7P09564 240 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 IGHV1-8P0DP01 117 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 HLA-DMBP28068 263 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 FOXA3P55318 350 aaPredicted RBP3.26□□□□□ -1.89
SS18-223ENST00000583595 HRCT1Q6UXD1 115 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 Q6ZQT7 251 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 LINC00596Q86U02 117 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 AMN1Q8IY45 258 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 WFDC5Q8TCV5 224 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 ELSPBP1Q96BH3 223 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 ODF3Q96PU9 254 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 RPP21Q9H633 154 aaKnown RBP3.26□□□□□ -1.89
SS18-223ENST00000583595 ZNF355PQ9NSJ1 428 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 EPDR1Q9UM22 224 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 SCN3AQ9NY46 2000 aa3.26□□□□□ -1.89
SS18-223ENST00000583595 SCN10AQ9Y5Y9 1956 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 EYSQ5T1H1 3165 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 DOCK11Q5JSL3 2073 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 TMED7-TICAM2A0A0A6YYA0 188 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 TRAV8-1A0A0A6YYK1 113 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 IGKV1-6A0A0C4DH72 117 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 OOSP1A8MZH6 123 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 LTAP01374 205 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 IGKCP01834 107 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 COX7CP15954 63 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 CD52P31358 61 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 CMC4P56277 68 aaPredicted RBP3.25□□□□□ -1.89
SS18-223ENST00000583595 PLGLB1Q02325 96 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 EBI3Q14213 229 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 RNASE13Q5GAN3 156 aaKnown RBP3.25□□□□□ -1.89
SS18-223ENST00000583595 Q5XG85 94 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 MIC13Q5XKP0 118 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 GUSBP11Q6P575 273 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 C3orf56Q8N813 242 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 BORCS8Q96FH0 119 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 DPH3Q96FX2 82 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 LINC00477Q96M19 166 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 MGST2Q99735 147 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 PLA2G2FQ9BZM2 168 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 TIMM8BQ9Y5J9 83 aaPredicted RBP3.25□□□□□ -1.89
SS18-223ENST00000583595 PRUNE2Q8WUY3 3088 aa3.25□□□□□ -1.89
SS18-223ENST00000583595 PRRC2BQ5JSZ5 2229 aaKnown RBP3.24□□□□□ -1.89
SS18-223ENST00000583595 COL4A6Q14031 1691 aa3.24□□□□□ -1.89
SS18-223ENST00000583595 A0A096LNJ9 63 aa3.24□□□□□ -1.89
SS18-223ENST00000583595 IGKV1D-43A0A0B4J1Z2 117 aa3.24□□□□□ -1.89
SS18-223ENST00000583595 LOC107984156A0A0G2JMH3 177 aa3.24□□□□□ -1.89
SS18-223ENST00000583595 A0A0J9YW62 118 aa3.24□□□□□ -1.89
SS18-223ENST00000583595 A0A1B0GVY2 172 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms