RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ASIPP42127 132 aa7.49□□□□□ -1.21
SS18-207ENST00000577636 CDKN1BP46527 198 aa7.49□□□□□ -1.21
SS18-207ENST00000577636 AKR1D1P51857 326 aa7.49□□□□□ -1.21
SS18-207ENST00000577636 DEFB1P60022 68 aa7.49□□□□□ -1.21
SS18-207ENST00000577636 TWIST1Q15672 202 aa7.49□□□□□ -1.21
SS18-207ENST00000577636 BAGE3Q86Y29 109 aa7.49□□□□□ -1.21
SS18-207ENST00000577636 APRG1Q8IVJ8 170 aa7.49□□□□□ -1.21
SS18-207ENST00000577636 C7orf71A4D174 169 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 KLLNB2CW77 178 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 OR11H12B2RN74 326 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 UBE2CO00762 179 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 IGLC6P0CF74 106 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 HLA-DRB4P13762 266 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 HOXA5P20719 270 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 CACNG7P62955 275 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 GTSCR1Q86UQ5 136 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 MAP6D1Q9H9H5 199 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 HLA-DRB4X5D2U9 266 aa7.48□□□□□ -1.21
SS18-207ENST00000577636 IGKV3D-20A0A0C4DH25 116 aa7.47□□□□□ -1.21
SS18-207ENST00000577636 AMBPP02760 352 aa7.47□□□□□ -1.21
SS18-207ENST00000577636 NUTF2P61970 127 aaKnown RBP7.47□□□□□ -1.21
SS18-207ENST00000577636 OR10J3Q5JRS4 329 aa7.47□□□□□ -1.21
SS18-207ENST00000577636 GDF5OSQ5U4N7 250 aa7.47□□□□□ -1.21
SS18-207ENST00000577636 SPANXN1Q5VSR9 72 aa7.47□□□□□ -1.21
SS18-207ENST00000577636 TRAV12-3A0A0B4J271 114 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 KNCNA6PVL3 124 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 OR5AL1P0C617 328 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 MED14OSP0DP75 135 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 SRIP30626 198 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 SSTP61278 116 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 Q0VG73 95 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 COA6Q5JTJ3 125 aaKnown RBP7.46□□□□□ -1.22
SS18-207ENST00000577636 PRR9Q5T870 116 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 SSBP4Q9BWG4 385 aaPredicted RBP7.46□□□□□ -1.22
SS18-207ENST00000577636 PHLDA3Q9Y5J5 127 aa7.46□□□□□ -1.22
SS18-207ENST00000577636 LOC102724200A0A096LPH7 203 aaPredicted RBP7.45□□□□□ -1.22
SS18-207ENST00000577636 H3BMM0 161 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 NTF3P20783 257 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 SLAQ13239 276 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 SPINK13Q1W4C9 94 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 KIAA1644Q3SXP7 199 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 ANXA2RQ3ZCQ2 193 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 MUC21Q5SSG8 566 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 GFI1BQ5VTD9 330 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 ZNF493Q6ZR52 646 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 STHQ8IWL8 128 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 GATD1Q8NB37 220 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 TMEM18Q96B42 140 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 CLUHP3Q96NS8 147 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 CNFNQ9BYD5 112 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 C11orf21Q9P2W6 132 aa7.45□□□□□ -1.22
SS18-207ENST00000577636 TIMM8BQ9Y5J9 83 aaPredicted RBP7.45□□□□□ -1.22
SS18-207ENST00000577636 TRGV11A0A075B6L2 103 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 H3BVH4 76 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 M0R2Z0 102 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 INSP01308 110 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 CD7P09564 240 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 HIST3H2BBQ8N257 126 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 DEFB125Q8N687 156 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 LINC00476Q8WZB0 136 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 TMEM191AQ9H0A3 160 aa7.44□□□□□ -1.22
SS18-207ENST00000577636 TRAV12-2A0A075B6T6 113 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 IGHV1OR15-1A0A075B7D0 117 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 MUC21A0A0G2JKD1 596 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 MUC21A0A140T8X8 626 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 SNAI2O43623 268 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 PPBPP02775 128 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 TDRG1Q3Y452 100 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 PDZD11Q5EBL8 140 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 DNLZQ5SXM8 178 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 FAM104BQ5XKR9 115 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 AMTNQ6UX39 209 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 SYT8Q8NBV8 401 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 C20orf144Q9BQM9 153 aa7.43□□□□□ -1.22
SS18-207ENST00000577636 ALKBH7Q9BT30 221 aaPredicted RBP7.43□□□□□ -1.22
SS18-207ENST00000577636 IGHV4-4A0A075B6R2 117 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 CBY3A6NI87 242 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 A8MTW9 85 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 SMIM17P0DL12 118 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 FABP4P15090 132 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 CKS2P33552 79 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 ODF3L2Q3SX64 289 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 ORMDL3Q8N138 153 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 OR10AG1Q8NH19 301 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 TMEM208Q9BTX3 173 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 SAMD10Q9BYL1 202 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 WFDC10AQ9H1F0 79 aa7.42□□□□□ -1.22
SS18-207ENST00000577636 PLECQ15149 4684 aaKnown RBP7.42□□□□□ -1.22
SS18-207ENST00000577636 M0R381 172 aa7.41□□□□□ -1.22
SS18-207ENST00000577636 GNRH2O43555 120 aa7.41□□□□□ -1.22
SS18-207ENST00000577636 ZNF324O75467 553 aaPredicted RBP7.41□□□□□ -1.22
SS18-207ENST00000577636 FXYD7P58549 80 aa7.41□□□□□ -1.22
SS18-207ENST00000577636 KIR3DS1Q14943 382 aa7.41□□□□□ -1.22
SS18-207ENST00000577636 C18orf32Q8TCD1 76 aa7.41□□□□□ -1.22
SS18-207ENST00000577636 PACRGQ96M98 296 aaPredicted RBP7.41□□□□□ -1.22
SS18-207ENST00000577636 AP1S3Q96PC3 154 aa7.41□□□□□ -1.22
SS18-207ENST00000577636 C1QTNF4Q9BXJ3 329 aa7.41□□□□□ -1.22
SS18-207ENST00000577636 ALMS1Q8TCU4 4167 aa7.4□□□□□ -1.22
SS18-207ENST00000577636 HSBP1O75506 76 aa7.4□□□□□ -1.22
SS18-207ENST00000577636 SERF1AO75920 110 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms