RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 HLA-DRB4X5D2U9 266 aa5.09□□□□□ -1.59
SMG6-217ENST00000575338 USP9YO00507 2555 aaPredicted RBP5.09□□□□□ -1.6
SMG6-217ENST00000575338 TRAV12-3A0A0B4J271 114 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 A8MTW9 85 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 H7C1H1 209 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 CCL24O00175 119 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 NCR2O95944 276 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 IGLC3P0DOY3 106 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 RNASE3P12724 160 aaKnown RBP5.08□□□□□ -1.6
SMG6-217ENST00000575338 SUMO2P61956 95 aaKnown RBP5.08□□□□□ -1.6
SMG6-217ENST00000575338 NUTF2P61970 127 aaKnown RBP5.08□□□□□ -1.6
SMG6-217ENST00000575338 FHL3Q13643 280 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 ZNF575Q86XF7 245 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 POM121L12Q8N7R1 296 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 C2orf88Q9BSF0 95 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 SMIM2Q9BVW6 85 aa5.08□□□□□ -1.6
SMG6-217ENST00000575338 TIMM8BQ9Y5J9 83 aaPredicted RBP5.08□□□□□ -1.6
SMG6-217ENST00000575338 SMKR1H3BMG3 65 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 MGPP08493 103 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 DEFB131AP59861 70 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 ZNF415Q09FC8 603 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 DEFB136Q30KP8 78 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 DEFB114Q30KQ6 69 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 Q6ZN92 141 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 DLX4Q92988 240 aaPredicted RBP5.07□□□□□ -1.6
SMG6-217ENST00000575338 C9orf85Q96MD7 179 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 FAM110AQ9BQ89 295 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 LINC00467Q9BRT7 94 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 MRPS16Q9Y3D3 137 aaKnown RBP5.07□□□□□ -1.6
SMG6-217ENST00000575338 GOLT1BQ9Y3E0 138 aa5.07□□□□□ -1.6
SMG6-217ENST00000575338 VPS13CQ709C8 3753 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 FBN2P35556 2912 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 IGHV3-16A0A0C4DH30 117 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 CBY3A6NI87 242 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 A8MWV9 139 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 H3BMM0 161 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.06□□□□□ -1.6
SMG6-217ENST00000575338 GNRH2O43555 120 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 NUDT3O95989 172 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 INSP01308 110 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 FOSL1P15407 271 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 EDN2P20800 178 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 KRTAP1-1Q07627 177 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 KIR3DS1Q14943 382 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 SPINK13Q1W4C9 94 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 SLC25A34Q6PIV7 304 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 STHQ8IWL8 128 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 TMEM61Q8N0U2 210 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 C14orf178Q8N769 122 aaPredicted RBP5.06□□□□□ -1.6
SMG6-217ENST00000575338 NRACQ8N912 160 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 LINC01006Q8NI28 216 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 PTH2Q96A98 100 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 KIR2DL4Q99706 377 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 RNF114Q9Y508 228 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 NBPF19A0A087WUL8 3843 aa5.06□□□□□ -1.6
SMG6-217ENST00000575338 APCP25054 2843 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 IGLV2-18A0A075B6J9 118 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 A0A096LNJ9 63 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 OR11H12B2RN74 326 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 F5H697 171 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 H0Y8G0 127 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 RHODO00212 210 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 VCYO14598 125 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 IGKV3-20P01619 116 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 PRSS1P07477 247 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 IGLL1P15814 213 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 AMTNQ6UX39 209 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 C12orf54Q6X4T0 127 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 TRPT1Q86TN4 253 aaKnown RBP5.05□□□□□ -1.6
SMG6-217ENST00000575338 Q8N1Y9 231 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 TMEM158Q8WZ71 300 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 SPXQ9BT56 116 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 MAP6D1Q9H9H5 199 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 ESM1Q9NQ30 184 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 CELSR2Q9HCU4 2923 aa5.05□□□□□ -1.6
SMG6-217ENST00000575338 NOTCH2Q04721 2471 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 MUC4Q99102 2169 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 TRAV12-2A0A075B6T6 113 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 TRAV12-1A0A0B4J245 112 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 TRBV6-5A0A0K0K1A5 114 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 CD28P10747 220 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 PLNP26678 52 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 DEFB1P60022 68 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 ZNF56Q15929 161 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 CD300EQ496F6 205 aaPredicted RBP5.04□□□□□ -1.6
SMG6-217ENST00000575338 ZNF876PQ49A33 203 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 PAPPA-AS1Q5QFB9 102 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 PRR31Q5SQ13 230 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 COL5A1-AS1Q5SY13 56 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 HIST2H2BCQ6DN03 193 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 ADAMTSL5Q6ZMM2 481 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 C18orf65Q6ZTR6 163 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 NDUFA11Q86Y39 141 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 ATOH7Q8N100 152 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 DUX3Q96PT4 197 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 CITED2Q99967 270 aaPredicted RBP5.04□□□□□ -1.6
SMG6-217ENST00000575338 C1QTNF4Q9BXJ3 329 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 EDA2RQ9HAV5 297 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 CYSLTR1Q9Y271 337 aa5.04□□□□□ -1.6
SMG6-217ENST00000575338 ZNF256Q9Y2P7 627 aaPredicted RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms