RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PPP1R1AQ13522 171 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 IL18Q14116 193 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 PIK3CD-AS1Q5SR53 167 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 CFAP126Q5VTH2 177 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 WDR73Q6P4I2 378 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 DPPA3Q6W0C5 159 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 SDIM1Q6ZPB5 146 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 NRARPQ7Z6K4 114 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 CYB561D1Q8N8Q1 229 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 DYNC2LI1Q8TCX1 351 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 RNF185Q96GF1 192 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 FUNDC2Q9BWH2 189 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 MIXL1Q9H2W2 232 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 LENEPQ9Y5L5 61 aa3.69□□□□□ -1.82
VPS53-208ENST00000570650 A0A087WX48 190 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 USP17L23D6RBM5 183 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 RHODO00212 210 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 PHOX2AO14813 284 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 RGS5O15539 181 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 PRSS1P07477 247 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 FAUP35544 74 aaKnown RBP3.68□□□□□ -1.82
VPS53-208ENST00000570650 CSN1S1P47710 185 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 RPL29P47914 159 aaKnown RBP3.68□□□□□ -1.82
VPS53-208ENST00000570650 TAS2R30P59541 319 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 CIRBPQ14011 172 aaKnown RBP3.68□□□□□ -1.82
VPS53-208ENST00000570650 ZNF876PQ49A33 203 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 KCNIP4Q6PIL6 250 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 C7orf33Q8WU49 177 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 KCNS1Q96KK3 526 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 CHCHD7Q9BUK0 85 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 SDF2L1Q9HCN8 221 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 RABL2AQ9UBK7 228 aaPredicted RBP3.68□□□□□ -1.82
VPS53-208ENST00000570650 KIF25-AS1Q9Y6Z4 181 aa3.68□□□□□ -1.82
VPS53-208ENST00000570650 A0A087WYN8 130 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 TRAV21A0A0B4J279 112 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 PGPA6NDG6 321 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 CTDSP2O14595 271 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 HLA-DQA1P01909 254 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 NBEAP1P0C6P0 100 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 CAV2P51636 162 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 REG3GQ6UW15 175 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 ASB13Q8WXK3 278 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 DPH3Q96FX2 82 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 DIRAS2Q96HU8 199 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 SLC25A2Q9BXI2 301 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 C20orf85Q9H1P6 137 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 WDR83OSQ9Y284 106 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 LPAP08519 4548 aa3.67□□□□□ -1.82
VPS53-208ENST00000570650 A0A087WXM4 84 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 CRPP02741 224 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 FGF8P55075 233 aaPredicted RBP3.66□□□□□ -1.82
VPS53-208ENST00000570650 BAXQ07812 192 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 ZNF506Q5JVG8 444 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 MCFD2Q8NI22 146 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 TMED6Q8WW62 240 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 PTH2Q96A98 100 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 PHYHIPLQ96FC7 376 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 SLC25A21Q9BQT8 299 aaPredicted RBP3.66□□□□□ -1.82
VPS53-208ENST00000570650 SAMD10Q9BYL1 202 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 PARLQ9H300 379 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 UQCC1Q9NVA1 299 aa3.66□□□□□ -1.82
VPS53-208ENST00000570650 RSL24D1Q9UHA3 163 aaKnown RBP3.66□□□□□ -1.82
VPS53-208ENST00000570650 UBE2L5PA0A1B0GUS4 154 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 C9orf170A2RU37 121 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 C7orf66A4D0T2 115 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 PGPEP1LA6NFU8 196 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 F6UZH7 168 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 L7N2F9 121 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 CHTF8P0CG12 524 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 RANP62826 216 aaKnown RBP3.65□□□□□ -1.83
VPS53-208ENST00000570650 VAMP2P63027 116 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 PRR3P79522 188 aaKnown RBP3.65□□□□□ -1.83
VPS53-208ENST00000570650 CTF1Q16619 201 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 SPINK6Q6UWN8 80 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 ENHOQ6UWT2 76 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 ZFP2Q6ZN57 461 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 MIR17HGQ75NE6 70 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 OR2T35Q8NGX2 323 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 SPACA4Q8TDM5 124 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 FXYD5Q96DB9 178 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 FAM167A-AS1Q96KT0 104 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 C9orf85Q96MD7 179 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 PLAC8Q9NZF1 115 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 Q9UF83 564 aa3.65□□□□□ -1.83
VPS53-208ENST00000570650 IGHV3-64A0A075B6Q5 118 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 A8MWV9 139 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 TMEM262E9PQX1 116 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 TAAR5O14804 337 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 CST7O76096 145 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 SMIM18P0DKX4 95 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 FGF7P21781 194 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 BCAP31P51572 246 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 AP3S2P59780 193 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 CNBPP62633 177 aaKnown RBP3.64□□□□□ -1.83
VPS53-208ENST00000570650 MIAQ16674 131 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 IAH1Q2TAA2 248 aaPredicted RBP3.64□□□□□ -1.83
VPS53-208ENST00000570650 GCSAMLQ5JQS6 135 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 C14orf178Q8N769 122 aaPredicted RBP3.64□□□□□ -1.83
VPS53-208ENST00000570650 C15orf54Q8N8G6 183 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 GTSF1Q8WW33 167 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms