RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 Q8N8P6 123 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 Q8N9W7 124 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 FAM110DQ8TAY7 271 aaPredicted RBP10.16□□□□□ -0.78
VPS4A-204ENST00000566354 ZFAND3Q9H8U3 227 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 KLK9Q9UKQ9 250 aa10.16□□□□□ -0.78
VPS4A-204ENST00000566354 B4DSR2 109 aa10.15□□□□□ -0.78
VPS4A-204ENST00000566354 EVI2AP22794 236 aa10.15□□□□□ -0.78
VPS4A-204ENST00000566354 SMIM20Q8N5G0 67 aa10.15□□□□□ -0.78
VPS4A-204ENST00000566354 A0A1W2PPM0 123 aa10.15□□□□□ -0.79
VPS4A-204ENST00000566354 ATP5LO75964 103 aa10.15□□□□□ -0.79
VPS4A-204ENST00000566354 IGKCP01834 107 aa10.15□□□□□ -0.79
VPS4A-204ENST00000566354 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.15□□□□□ -0.79
VPS4A-204ENST00000566354 IL17RELQ6ZVW7 336 aa10.15□□□□□ -0.79
VPS4A-204ENST00000566354 RAB37Q96AX2 223 aa10.15□□□□□ -0.79
VPS4A-204ENST00000566354 IGHV3OR16-10A0A075B7F0 116 aa10.14□□□□□ -0.79
VPS4A-204ENST00000566354 SMIM13P0DJ93 91 aa10.14□□□□□ -0.79
VPS4A-204ENST00000566354 RNF182Q8N6D2 247 aa10.14□□□□□ -0.79
VPS4A-204ENST00000566354 WFDC11Q8NEX6 87 aa10.14□□□□□ -0.79
VPS4A-204ENST00000566354 AKAP9Q99996 3911 aa10.14□□□□□ -0.79
VPS4A-204ENST00000566354 MYO9AB2RTY4 2548 aa10.14□□□□□ -0.79
VPS4A-204ENST00000566354 IGKV3D-20A0A0C4DH25 116 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 CENPVL3A0A0U1RRI6 287 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 PPIFP30405 207 aaKnown RBP10.13□□□□□ -0.79
VPS4A-204ENST00000566354 UBE2E1P51965 193 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 TMEM158Q8WZ71 300 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 AGPAT4-IT1Q9H0P7 198 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 ACANP16112 2415 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 IGLV2-18A0A075B6J9 118 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 IGKV2D-26A0A0A0MRZ7 120 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 DPM2O94777 84 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 GATA1P15976 413 aaPredicted RBP10.13□□□□□ -0.79
VPS4A-204ENST00000566354 LINC01356Q8N9X3 169 aa10.13□□□□□ -0.79
VPS4A-204ENST00000566354 NAA38Q9BRA0 125 aaKnown RBP10.13□□□□□ -0.79
VPS4A-204ENST00000566354 FABP2P12104 132 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 SAA4P35542 130 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 C4orf48Q5BLP8 95 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 TMEM78Q5T7P6 136 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 AJUBAQ96IF1 538 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 FOXC2Q99958 501 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 SPCS1Q9Y6A9 102 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 FLNBO75369 2602 aaKnown RBP10.12□□□□□ -0.79
VPS4A-204ENST00000566354 TRAV40A0A0B4J280 105 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 TEX48A0A1B0GUV7 120 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 CLPSL1A2RUU4 121 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 AVPP01185 164 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 HLA-DRB4P13762 266 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 ECSCRQ19T08 205 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 RNF183Q96D59 192 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 MRPL53Q96EL3 112 aaKnown RBP10.12□□□□□ -0.79
VPS4A-204ENST00000566354 C11orf21Q9P2W6 132 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 HLA-DRB4X5D2U9 266 aa10.12□□□□□ -0.79
VPS4A-204ENST00000566354 GCSHP23434 173 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 SAMD5Q5TGI4 173 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 MYOZ3Q8TDC0 251 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 CHAC1Q9BUX1 264 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 VPREB3Q9UKI3 123 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 ATP6V0E1O15342 81 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 IGHV4-31P0DP07 118 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 IGHV4-38-2P0DP08 117 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 LAGE3Q14657 143 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 ZC2HC1BQ5TFG8 222 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 BRD3OSQ6XYD6 125 aa10.11□□□□□ -0.79
VPS4A-204ENST00000566354 TRBV25-1A0A075B6N4 114 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 IGHV4-4A0A075B6R2 117 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 IGHV3-66A0A0C4DH42 116 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 F8W1H4 67 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 F8WDY8 70 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 NPFFO15130 113 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 CLEC19AQ6UXS0 136 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 CCDC140Q96MF4 163 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 TRAV8-2A0A0B4J237 113 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 IGHV7-4-1A0A0J9YVY3 117 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 TRGV3P03979 118 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 FXYD2P54710 66 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 C9orf47Q6ZRZ4 202 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 C8orf86Q6ZUL3 223 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 GTSCR1Q86UQ5 136 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 NRACQ8N912 160 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 EEF1AKMT3Q96AZ1 226 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 METTL26Q96S19 204 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 TM2D2Q9BX73 214 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 MXRA5Q9NR99 2828 aa10.1□□□□□ -0.79
VPS4A-204ENST00000566354 TRBV7-1A0A0A6YYK4 115 aa10.09□□□□□ -0.79
VPS4A-204ENST00000566354 IGHV1-69DA0A0B4J2H0 117 aa10.09□□□□□ -0.79
VPS4A-204ENST00000566354 IGHV1-69P01742 117 aa10.09□□□□□ -0.79
VPS4A-204ENST00000566354 ANAPC13Q9BS18 74 aa10.09□□□□□ -0.79
VPS4A-204ENST00000566354 TTTY13Q9BZ97 58 aa10.09□□□□□ -0.79
VPS4A-204ENST00000566354 TMEM126AQ9H061 195 aa10.09□□□□□ -0.79
VPS4A-204ENST00000566354 SONP18583 2426 aaKnown RBP10.09□□□□□ -0.79
VPS4A-204ENST00000566354 GATA3P23771 443 aa10.08□□□□□ -0.8
VPS4A-204ENST00000566354 TMEM160Q9NX00 188 aa10.08□□□□□ -0.8
VPS4A-204ENST00000566354 IGHV3OR16-13A0A075B7E8 117 aa10.08□□□□□ -0.8
VPS4A-204ENST00000566354 IGHV3-74A0A0B4J1X5 117 aa10.08□□□□□ -0.8
VPS4A-204ENST00000566354 SPANXN1Q5VSR9 72 aa10.08□□□□□ -0.8
VPS4A-204ENST00000566354 C1QTNF4Q9BXJ3 329 aa10.08□□□□□ -0.8
VPS4A-204ENST00000566354 SELENOKQ9Y6D0 94 aa10.08□□□□□ -0.8
VPS4A-204ENST00000566354 U3KQE9 123 aa10.08□□□□□ -0.8
VPS4A-204ENST00000566354 A0A087WX48 190 aa10.07□□□□□ -0.8
VPS4A-204ENST00000566354 CEND1Q8N111 149 aa10.07□□□□□ -0.8
VPS4A-204ENST00000566354 MRPL35Q9NZE8 188 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms