RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 A8MWV9 139 aa10.05□□□□□ -0.8
CLN3-222ENST00000566083 IGLV2-11P01706 119 aa10.05□□□□□ -0.8
CLN3-222ENST00000566083 GIPP09681 153 aaPredicted RBP10.05□□□□□ -0.8
CLN3-222ENST00000566083 GCSHP23434 173 aa10.05□□□□□ -0.8
CLN3-222ENST00000566083 ZNF80P51504 273 aaPredicted RBP10.05□□□□□ -0.8
CLN3-222ENST00000566083 ZFP2Q6ZN57 461 aa10.05□□□□□ -0.8
CLN3-222ENST00000566083 ATP6V0E2Q8NHE4 81 aa10.05□□□□□ -0.8
CLN3-222ENST00000566083 FRZBQ92765 325 aa10.05□□□□□ -0.8
CLN3-222ENST00000566083 GTSF1LQ9H1H1 148 aa10.05□□□□□ -0.8
CLN3-222ENST00000566083 FABP5P3A8MUU1 101 aa10.04□□□□□ -0.8
CLN3-222ENST00000566083 GGTLC3B5MD39 225 aa10.04□□□□□ -0.8
CLN3-222ENST00000566083 S100A4P26447 101 aaKnown RBP10.04□□□□□ -0.8
CLN3-222ENST00000566083 LAGE3Q14657 143 aa10.04□□□□□ -0.8
CLN3-222ENST00000566083 ZNF506Q5JVG8 444 aa10.04□□□□□ -0.8
CLN3-222ENST00000566083 IFNA7P01567 189 aa10.03□□□□□ -0.8
CLN3-222ENST00000566083 XGP55808 180 aa10.03□□□□□ -0.8
CLN3-222ENST00000566083 HIST1H2BAQ96A08 127 aa10.03□□□□□ -0.8
CLN3-222ENST00000566083 TM2D2Q9BX73 214 aa10.03□□□□□ -0.8
CLN3-222ENST00000566083 C11orf21Q9P2W6 132 aa10.03□□□□□ -0.8
CLN3-222ENST00000566083 IGLV5-52A0A0A0MRZ9 124 aa10.02□□□□□ -0.81
CLN3-222ENST00000566083 CTXND1A0A1B0GTU2 59 aa10.02□□□□□ -0.81
CLN3-222ENST00000566083 PGPEP1LA6NFU8 196 aa10.02□□□□□ -0.81
CLN3-222ENST00000566083 RNASE3P12724 160 aaKnown RBP10.02□□□□□ -0.81
CLN3-222ENST00000566083 A0A087WWC5 75 aa10.01□□□□□ -0.81
CLN3-222ENST00000566083 ASIPP42127 132 aa10.01□□□□□ -0.81
CLN3-222ENST00000566083 FGF8P55075 233 aaPredicted RBP10.01□□□□□ -0.81
CLN3-222ENST00000566083 KRTAP10-1P60331 282 aa10.01□□□□□ -0.81
CLN3-222ENST00000566083 TOR2AQ5JU69 321 aa10.01□□□□□ -0.81
CLN3-222ENST00000566083 DPPA3Q6W0C5 159 aa10.01□□□□□ -0.81
CLN3-222ENST00000566083 IL36BQ9NZH7 164 aa10.01□□□□□ -0.81
CLN3-222ENST00000566083 IGHV3-73A0A0B4J1V6 119 aa10□□□□□ -0.81
CLN3-222ENST00000566083 AKR1C8PQ5T2L2 129 aa10□□□□□ -0.81
CLN3-222ENST00000566083 SYT8Q8NBV8 401 aa10□□□□□ -0.81
CLN3-222ENST00000566083 TMEM70Q9BUB7 260 aa10□□□□□ -0.81
CLN3-222ENST00000566083 ZFP30Q9Y2G7 519 aa10□□□□□ -0.81
CLN3-222ENST00000566083 ARL2-SNX15V9GYD0 113 aa10□□□□□ -0.81
CLN3-222ENST00000566083 DMBT1Q9UGM3 2413 aaPredicted RBP10□□□□□ -0.81
CLN3-222ENST00000566083 FXYD6-FXYD2A0A087WZ82 144 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 TRAV8-3A0A0A6YYJ7 113 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 LRCOL1A6NCL2 159 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 RHODO00212 210 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 SEC11BP0C7V7 166 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 INAFM2P0DMQ5 153 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 FUSP35637 526 aaKnown RBP eCLIP9.99□□□□□ -0.81
CLN3-222ENST00000566083 LGALSLQ3ZCW2 172 aaPredicted RBP9.99□□□□□ -0.81
CLN3-222ENST00000566083 RPL7L1Q6DKI1 246 aaKnown RBP9.99□□□□□ -0.81
CLN3-222ENST00000566083 TCEAL7Q9BRU2 100 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 PARLQ9H300 379 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 COX11Q9Y6N1 276 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 IGKV3D-20A0A0C4DH25 116 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 PEX7O00628 323 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 DNLZQ5SXM8 178 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 Q8N814 137 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 Q9HAA7 133 aa9.99□□□□□ -0.81
CLN3-222ENST00000566083 RNF222A6NCQ9 220 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 B4DEV8 164 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 FAM229AH3BQW9 127 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 IGHV3-30P01768 117 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 IGHV3-33P01772 117 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 C1QBP02746 253 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 IGHV3-30-3P0DP02 117 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 IGHV3-30-5P0DP03 117 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 Q5BKY6 102 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 Q5VSD8 79 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 COX8CQ7Z4L0 72 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 OR2T35Q8NGX2 323 aa9.98□□□□□ -0.81
CLN3-222ENST00000566083 TRAV34A0A0B4J273 112 aa9.97□□□□□ -0.81
CLN3-222ENST00000566083 UBE2G1P62253 170 aa9.97□□□□□ -0.81
CLN3-222ENST00000566083 Q86TA4 180 aa9.97□□□□□ -0.81
CLN3-222ENST00000566083 STOML3Q8TAV4 291 aa9.97□□□□□ -0.81
CLN3-222ENST00000566083 FMC1Q96HJ9 113 aa9.97□□□□□ -0.81
CLN3-222ENST00000566083 LINC00479Q96M42 142 aa9.97□□□□□ -0.81
CLN3-222ENST00000566083 FAM74A7A6NL05 159 aa9.96□□□□□ -0.82
CLN3-222ENST00000566083 LINC00694P0DN24 101 aa9.96□□□□□ -0.82
CLN3-222ENST00000566083 FHITP49789 147 aa9.96□□□□□ -0.82
CLN3-222ENST00000566083 UBE2G2P60604 165 aa9.96□□□□□ -0.82
CLN3-222ENST00000566083 ZNF726P1Q15940 193 aa9.96□□□□□ -0.82
CLN3-222ENST00000566083 FAM162BQ5T6X4 162 aa9.96□□□□□ -0.82
CLN3-222ENST00000566083 OR11H4Q8NGC9 324 aa9.96□□□□□ -0.82
CLN3-222ENST00000566083 RMI2Q96E14 147 aa9.96□□□□□ -0.82
CLN3-222ENST00000566083 HERC1Q15751 4861 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 GAGE12JA6NER3 117 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 PFDN1O60925 122 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 GAGE1Q13065 139 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 GAGE4Q13068 117 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 GAGE5Q13069 117 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 GAGE13Q4V321 117 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 PHLDA3Q9Y5J5 127 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 URGCP-MRPS24S4R325 110 aa9.95□□□□□ -0.82
CLN3-222ENST00000566083 TRBV6-1A0A0K0K1D8 114 aa9.94□□□□□ -0.82
CLN3-222ENST00000566083 MAP1LC3B2A6NCE7 125 aa9.94□□□□□ -0.82
CLN3-222ENST00000566083 KRBOX1C9JBD0 128 aa9.94□□□□□ -0.82
CLN3-222ENST00000566083 H3BVH4 76 aa9.94□□□□□ -0.82
CLN3-222ENST00000566083 TPT1P13693 172 aaKnown RBP9.94□□□□□ -0.82
CLN3-222ENST00000566083 DMRTA1Q5VZB9 504 aa9.94□□□□□ -0.82
CLN3-222ENST00000566083 UFSP1Q6NVU6 142 aa9.94□□□□□ -0.82
CLN3-222ENST00000566083 Q6ZSN1 163 aa9.94□□□□□ -0.82
CLN3-222ENST00000566083 MAP1LC3BQ9GZQ8 125 aa9.94□□□□□ -0.82
CLN3-222ENST00000566083 ARMS2P0C7Q2 107 aa9.93□□□□□ -0.82
CLN3-222ENST00000566083 ZC2HC1AQ96GY0 325 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms