RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ITLN2Q8WWU7 325 aaPredicted RBP3.65□□□□□ -1.83
VPS35-205ENST00000563984 SIP14410 1827 aa3.65□□□□□ -1.83
VPS35-205ENST00000563984 ANKRD36A6QL64 1941 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 COL18A1P39060 1754 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 KIAA1549Q9HCM3 1950 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 LRRC37A3O60309 1634 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 IGHV3OR16-12A0A075B7B8 117 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 A0A087X002 238 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 TRGV8A0A0C4DH27 118 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 TRBV10-2A0A0K0K1G8 114 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 A6NN06 94 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 H7BZZ5 65 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 LMO2P25791 158 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 ZNF117Q03924 483 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 KLKP1Q107X0 134 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 ATXN8Q156A1 80 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 LPAL2Q16609 132 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 ESRGQ1W209 222 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 S100A7L2Q5SY68 101 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 FAM218AQ96MZ4 157 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 LINC00474Q9P2X8 69 aa3.64□□□□□ -1.83
VPS35-205ENST00000563984 PAPPA2Q9BXP8 1791 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 NHSQ6T4R5 1651 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 TMSB15BA0A087X1C1 80 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 FGF12P61328 243 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 SERF2P84101 59 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 MRPL51Q4U2R6 128 aaKnown RBP3.63□□□□□ -1.83
VPS35-205ENST00000563984 ZNF497Q6ZNH5 498 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 C17orf82Q86X59 251 aaPredicted RBP3.63□□□□□ -1.83
VPS35-205ENST00000563984 NDUFA11Q86Y39 141 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 DAND5Q8N907 189 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 CLEC2BQ92478 149 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 RMI2Q96E14 147 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 ZNF71Q9NQZ8 489 aaPredicted RBP3.63□□□□□ -1.83
VPS35-205ENST00000563984 TAC3Q9UHF0 121 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 POLEQ07864 2286 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 NUP98P52948 1817 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 ATG2BQ96BY7 2078 aa3.63□□□□□ -1.83
VPS35-205ENST00000563984 COL2A1P02458 1487 aaPredicted RBP3.62□□□□□ -1.83
VPS35-205ENST00000563984 A0A0G2JMZ2 1700 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 LRRC37A2A6NM11 1700 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 LRRC37AA6NMS7 1700 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 TRPM6Q9BX84 2022 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 TRBV7-1A0A0A6YYK4 115 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 PPYP01298 95 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 IGHV3-43DP0DP04 118 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 MGST1P10620 155 aaKnown RBP3.62□□□□□ -1.83
VPS35-205ENST00000563984 IFI27P40305 119 aaPredicted RBP3.62□□□□□ -1.83
VPS35-205ENST00000563984 SPANXN1Q5VSR9 72 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 Q6JHZ5 121 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 LYPD5Q6UWN5 251 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 SOSTDC1Q6X4U4 206 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 C11orf52Q96A22 123 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 NABP2Q9BQ15 211 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 FGF22Q9HCT0 170 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 DOCK9Q9BZ29 2069 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 DUOX1Q9NRD9 1551 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 LMO7Q8WWI1 1683 aa3.62□□□□□ -1.83
VPS35-205ENST00000563984 TNRC6CQ9HCJ0 1690 aaKnown RBP3.62□□□□□ -1.83
VPS35-205ENST00000563984 IGKV1D-17A0A075B6S4 117 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 IGHV1OR15-9A0A0B4J2B8 117 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 IQCF6A8MYZ5 107 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 PEX7O00628 323 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 IGKV1-16P04430 117 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 HMGN2P05204 90 aaKnown RBP3.61□□□□□ -1.83
VPS35-205ENST00000563984 BSPH1Q075Z2 132 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 IGFL3Q6UXB1 125 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 PATE2Q6UY27 113 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 MIR17HGQ75NE6 70 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 MAPK1IP1LQ8NDC0 245 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 TIMM21Q9BVV7 248 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 KLK13Q9UKR3 277 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 TANC2Q9HCD6 1990 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 NUMA1Q14980 2115 aa3.61□□□□□ -1.83
VPS35-205ENST00000563984 MGAMO43451 1857 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 TRBV25-1A0A075B6N4 114 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 TRAV7A0A075B6U4 112 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 IGHV1OR15-1A0A075B7D0 117 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 LEPROTO15243 131 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 FRMD6-AS1P0C7T7 363 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 REG3AQ06141 175 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 VMO1Q7Z5L0 202 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 FAM223AQ8IWN6 122 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 LINC00269Q8N2A0 174 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 CCL4L1Q8NHW4 92 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 Q96M85 177 aa3.6□□□□□ -1.83
VPS35-205ENST00000563984 KIAA2026Q5HYC2 2103 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 DOT1LQ8TEK3 1739 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 TRBV7-3A0A075B6L6 115 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 IGKV3D-20A0A0C4DH25 116 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 LINC01549A6NIU2 74 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 IGLV2-8P01709 118 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 ZNF32P17041 273 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 IGHV1-2P23083 117 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 UBE2D1P51668 147 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 PLGLAQ15195 96 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 KISS1Q15726 138 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 LCE3CQ5T5A8 94 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 C2orf82Q6UX34 121 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 C20orf197Q8N268 126 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms