RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 COL7A1Q02388 2944 aa11.86□□□□□ -0.51
VPS4A-202ENST00000562754 STAB2Q8WWQ8 2551 aa11.85□□□□□ -0.51
VPS4A-202ENST00000562754 OR5AL1P0C617 328 aa11.85□□□□□ -0.51
VPS4A-202ENST00000562754 CTRLP40313 264 aa11.85□□□□□ -0.51
VPS4A-202ENST00000562754 ATRAIDQ6UW56 229 aa11.85□□□□□ -0.51
VPS4A-202ENST00000562754 OR10AG1Q8NH19 301 aa11.85□□□□□ -0.51
VPS4A-202ENST00000562754 SPXQ9BT56 116 aa11.85□□□□□ -0.51
VPS4A-202ENST00000562754 TPPP3Q9BW30 176 aa11.85□□□□□ -0.51
VPS4A-202ENST00000562754 MRPL16Q9NX20 251 aaKnown RBP11.85□□□□□ -0.51
VPS4A-202ENST00000562754 MUC21A0A0G2JKD1 596 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 MUC21A0A140T8X8 626 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 SMIM27A0A1W2PRY6 76 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 SPINK4O60575 86 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 FAM222AQ5U5X8 452 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 LYZL1Q6UWQ5 148 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 CTDSP1Q9GZU7 261 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 GFRA4Q9GZZ7 299 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 RPS10P5Q9NQ39 176 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 DKK2Q9UBU2 259 aa11.84□□□□□ -0.51
VPS4A-202ENST00000562754 A0A087WWC5 75 aa11.83□□□□□ -0.52
VPS4A-202ENST00000562754 A0A1W2PPQ1 181 aa11.83□□□□□ -0.52
VPS4A-202ENST00000562754 FAM231BA6NCW3 169 aa11.83□□□□□ -0.52
VPS4A-202ENST00000562754 HIGD1CA8MV81 97 aa11.83□□□□□ -0.52
VPS4A-202ENST00000562754 M0R2P5 195 aa11.83□□□□□ -0.52
VPS4A-202ENST00000562754 NXPH4O95158 308 aa11.83□□□□□ -0.52
VPS4A-202ENST00000562754 FOXA3P55318 350 aaPredicted RBP11.83□□□□□ -0.52
VPS4A-202ENST00000562754 Q6ZTI0 123 aa11.83□□□□□ -0.52
VPS4A-202ENST00000562754 U3KQK5 164 aa11.83□□□□□ -0.52
VPS4A-202ENST00000562754 TRGV1A0A0A0MS02 117 aa11.82□□□□□ -0.52
VPS4A-202ENST00000562754 LYRM9A8MSI8 78 aa11.82□□□□□ -0.52
VPS4A-202ENST00000562754 LINC00612Q8N6U2 182 aa11.82□□□□□ -0.52
VPS4A-202ENST00000562754 PGLYRP4Q96LB8 373 aa11.82□□□□□ -0.52
VPS4A-202ENST00000562754 PHLDA3Q9Y5J5 127 aa11.82□□□□□ -0.52
VPS4A-202ENST00000562754 NUP35Q8NFH5 326 aa11.81□□□□□ -0.52
VPS4A-202ENST00000562754 PTH2Q96A98 100 aa11.81□□□□□ -0.52
VPS4A-202ENST00000562754 CNFNQ9BYD5 112 aa11.81□□□□□ -0.52
VPS4A-202ENST00000562754 NACAE9PAV3 2078 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 GAGE12BA1L429 117 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 F2Z2F3 143 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 M0R381 172 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 GAGE7O76087 117 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 GAGE12FP0CL80 117 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 GAGE12GP0CL81 117 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 GAGE12IP0CL82 117 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 SPART-AS1P0CW21 52 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 LGALS9BQ3B8N2 356 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 ZNF876PQ49A33 203 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 DMRTA1Q5VZB9 504 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 ZFP82Q8N141 532 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 RASL10AQ92737 203 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 EDA2RQ9HAV5 297 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 TMEM242Q9NWH2 141 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 NAT8BQ9UHF3 227 aa11.8□□□□□ -0.52
VPS4A-202ENST00000562754 FAM3BP58499 235 aaPredicted RBP11.79□□□□□ -0.52
VPS4A-202ENST00000562754 SSTP61278 116 aa11.79□□□□□ -0.52
VPS4A-202ENST00000562754 MSRB1Q9NZV6 116 aa11.79□□□□□ -0.52
VPS4A-202ENST00000562754 IGHV4-4A0A075B6R2 117 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 TEX48A0A1B0GUV7 120 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 CXorf65A6NEN9 183 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 DEFB130BP0DP73 79 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 DEFB130AP0DP74 79 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 CACNG7P62955 275 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 SPANXN1Q5VSR9 72 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 WDR73Q6P4I2 378 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 SYT8Q8NBV8 401 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 IMMP2LQ96T52 175 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 JPT2Q9H910 190 aa11.78□□□□□ -0.52
VPS4A-202ENST00000562754 DAD1P61803 113 aa11.77□□□□□ -0.53
VPS4A-202ENST00000562754 C12orf74Q32Q52 190 aa11.77□□□□□ -0.53
VPS4A-202ENST00000562754 PIK3CD-AS1Q5SR53 167 aa11.77□□□□□ -0.53
VPS4A-202ENST00000562754 POM121L12Q8N7R1 296 aa11.77□□□□□ -0.53
VPS4A-202ENST00000562754 A0A1B0GUT8 65 aa11.76□□□□□ -0.53
VPS4A-202ENST00000562754 NTF3P20783 257 aa11.76□□□□□ -0.53
VPS4A-202ENST00000562754 S100A1P23297 94 aa11.76□□□□□ -0.53
VPS4A-202ENST00000562754 NANOS2P60321 138 aaKnown RBP11.76□□□□□ -0.53
VPS4A-202ENST00000562754 C11orf45Q8TAV5 145 aa11.76□□□□□ -0.53
VPS4A-202ENST00000562754 NDUFAF3Q9BU61 184 aa11.76□□□□□ -0.53
VPS4A-202ENST00000562754 URGCP-MRPS24S4R325 110 aa11.76□□□□□ -0.53
VPS4A-202ENST00000562754 TRGV2A0A075B6R0 118 aa11.75□□□□□ -0.53
VPS4A-202ENST00000562754 RS1O15537 224 aa11.75□□□□□ -0.53
VPS4A-202ENST00000562754 CFAP126Q5VTH2 177 aa11.75□□□□□ -0.53
VPS4A-202ENST00000562754 MRPL54Q6P161 138 aaKnown RBP11.75□□□□□ -0.53
VPS4A-202ENST00000562754 CBLN2Q8IUK8 224 aa11.75□□□□□ -0.53
VPS4A-202ENST00000562754 BORCS7Q96B45 105 aa11.75□□□□□ -0.53
VPS4A-202ENST00000562754 C18orf15Q96N68 181 aa11.75□□□□□ -0.53
VPS4A-202ENST00000562754 SAMD10Q9BYL1 202 aa11.75□□□□□ -0.53
VPS4A-202ENST00000562754 A0A1B0GXF2 115 aa11.74□□□□□ -0.53
VPS4A-202ENST00000562754 TWIST1Q15672 202 aa11.74□□□□□ -0.53
VPS4A-202ENST00000562754 KCNIP4Q6PIL6 250 aa11.74□□□□□ -0.53
VPS4A-202ENST00000562754 TRAV4A0A0B4J268 109 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 A8MWV9 139 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 SCO1O75880 301 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 IGHV3-53P01767 116 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 S100PP25815 95 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 RIGQ13278 110 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 UFSP1Q6NVU6 142 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 TMEM88Q6PEY1 159 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 Q6ZTC4 211 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 ZNF479Q96JC4 524 aa11.73□□□□□ -0.53
VPS4A-202ENST00000562754 AP1S3Q96PC3 154 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms