RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 KNTC1P50748 2209 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 BORCS7-ASMTA0A0B4J1R7 106 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 LOC101927531A0A1B0GV80 90 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 LOC107986453A0A1B0GWG9 222 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 A0A1W2PPB8 328 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 A0A1W2PRS3 328 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 IFITM5A6NNB3 132 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 KIR3DP1A8MWS1 328 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 DPM2O94777 84 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 LY6G6CO95867 125 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 OR2H2O95918 312 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 GYPBP06028 91 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 KDELR1P24390 212 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 DNAJB13P59910 316 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 RPL37P61927 97 aaKnown RBP0.12□□□□□ -2.39
SCFD1-216ENST00000555550 NEDD8Q15843 81 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 XAF1Q6GPH4 301 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 OR8I2Q8N0Y5 310 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 OR5AK2Q8NH90 309 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 SMR3AQ99954 134 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 USP9YO00507 2555 aaPredicted RBP0.12□□□□□ -2.39
SCFD1-216ENST00000555550 KIF13AQ9H1H9 1805 aa0.12□□□□□ -2.39
SCFD1-216ENST00000555550 TENM2Q9NT68 2774 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 RREB1Q92766 1687 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 ESPL1Q14674 2120 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.11□□□□□ -2.39
SCFD1-216ENST00000555550 FAM236AA0A1B0GUQ0 79 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 FAM236BA0A1B0GV22 79 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 CLPSL1A2RUU4 121 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 M0R2P5 195 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 IGKCP01834 107 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 IGLC6P0CF74 106 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 LINC00694P0DN24 101 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 ADCYAP1P18509 176 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 HIST1H1AQ02539 215 aaPredicted RBP0.11□□□□□ -2.39
SCFD1-216ENST00000555550 RHOHQ15669 191 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 IFT20Q8IY31 132 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 PYDC1Q8WXC3 89 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 TANC1Q9C0D5 1861 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 PLXNA1Q9UIW2 1896 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 SPTBP11277 2137 aa0.11□□□□□ -2.39
SCFD1-216ENST00000555550 BIRC6Q9NR09 4857 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 NINQ8N4C6 2090 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 ERCC6Q03468 1493 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 CDK12Q9NYV4 1490 aaPredicted RBP0.1□□□□□ -2.39
SCFD1-216ENST00000555550 TRAV23DV6A0A075B6W5 121 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 A0A096LPI6 279 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 TRBV30A0A0K0K1B3 111 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 MPC1LP0DKB6 136 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 EVI2AP22794 236 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 GTF2A1P52655 376 aaPredicted RBP0.1□□□□□ -2.39
SCFD1-216ENST00000555550 EMX2Q04743 252 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 OR2T2Q6IF00 324 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 Q6ZQY7 126 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 TCTE3Q8IZS6 198 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 SDF2Q99470 211 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 MRPL36Q9P0J6 103 aaKnown RBP0.1□□□□□ -2.39
SCFD1-216ENST00000555550 OVOS2A0A0J9YW53 1432 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 OVOS2Q6IE36 1432 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 AFDNP55196 1824 aaKnown RBP0.1□□□□□ -2.39
SCFD1-216ENST00000555550 SSC5DA1L4H1 1573 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 ITPR1Q14643 2758 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 CDK5RAP2Q96SN8 1893 aa0.1□□□□□ -2.39
SCFD1-216ENST00000555550 WDFY4Q6ZS81 3184 aa0.09□□□□□ -2.39
SCFD1-216ENST00000555550 IGHV1-24A0A0C4DH33 117 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 LOC107984156A0A0G2JMH3 177 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 ARL5CA6NH57 179 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 EDF1O60869 148 aaKnown RBP0.09□□□□□ -2.4
SCFD1-216ENST00000555550 PFDN1O60925 122 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 PAEPP09466 180 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 ETV6P41212 452 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 PLGLB1Q02325 96 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 CCDC153Q494R4 210 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 SPINK9Q5DT21 86 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 ATP11AUNQ6ZP68 121 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 C3orf62Q6ZUJ4 267 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 SLC25A26Q70HW3 274 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 ARL17AQ8IVW1 177 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 DMAC1Q96GE9 116 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 BANF2Q9H503 90 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 HERC2O95714 4834 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 FHAD1B1AJZ9 1412 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 BCL9LQ86UU0 1499 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 ATG2AQ2TAZ0 1938 aa0.09□□□□□ -2.4
SCFD1-216ENST00000555550 COL7A1Q02388 2944 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 TNRC18O15417 2968 aaPredicted RBP0.08□□□□□ -2.4
SCFD1-216ENST00000555550 MED13LQ71F56 2210 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 TRBV20-1A0A075B6N2 111 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 TRAV2A0A0B4J234 112 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 A0A0G2JMM0 328 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 TMEM30CPA0ZSE6 113 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 NDUFA2O43678 99 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 SLC25A6P12236 298 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 CAV3P56539 151 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 CKS1BP61024 79 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 NPC2P61916 151 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 PSPHP78330 225 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 OR8J3Q8NGG0 315 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 ATP6V0E2Q8NHE4 81 aa0.08□□□□□ -2.4
SCFD1-216ENST00000555550 SPANXA1Q9NS26 97 aa0.08□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms