RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MORN3Q6PF18 240 aaPredicted RBP9.4□□□□□ -0.91
SHMT2-207ENST00000553837 NRGNQ92686 78 aa9.4□□□□□ -0.91
SHMT2-207ENST00000553837 CNFNQ9BYD5 112 aa9.4□□□□□ -0.91
SHMT2-207ENST00000553837 GAGE2DQ9UEU5 116 aa9.4□□□□□ -0.91
SHMT2-207ENST00000553837 ABCA2Q9BZC7 2435 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 IGKV2-40A0A087WW87 121 aaPredicted RBP9.39□□□□□ -0.91
SHMT2-207ENST00000553837 MYMXA0A1B0GTQ4 84 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 M0QXV9 152 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 ATP6V0E1O15342 81 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 IGKV2D-40P01614 121 aaPredicted RBP9.39□□□□□ -0.91
SHMT2-207ENST00000553837 IFITM1P13164 125 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 SMCPP49901 116 aaPredicted RBP9.39□□□□□ -0.91
SHMT2-207ENST00000553837 NFE4Q86UQ8 179 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 MSRB1Q9NZV6 116 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 G3V318 75 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 CCDC179H3BU77 68 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 GAS8-AS1O95177 125 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 ZNF688P0C7X2 276 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 LAGE3Q14657 143 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 ECSCRQ19T08 205 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 TTC32Q5I0X7 151 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 TEN1Q86WV5 123 aa9.39□□□□□ -0.91
SHMT2-207ENST00000553837 CFAP46Q8IYW2 2715 aa9.38□□□□□ -0.91
SHMT2-207ENST00000553837 ACACBO00763 2458 aa9.38□□□□□ -0.91
SHMT2-207ENST00000553837 TRAV25A0A0B4J276 109 aa9.38□□□□□ -0.91
SHMT2-207ENST00000553837 IGHV4-39P01824 125 aa9.38□□□□□ -0.91
SHMT2-207ENST00000553837 ORM1P02763 201 aa9.38□□□□□ -0.91
SHMT2-207ENST00000553837 ASIPP42127 132 aa9.38□□□□□ -0.91
SHMT2-207ENST00000553837 PKD1L2Q7Z442 2459 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 IGLV2-18A0A075B6J9 118 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 C15orf32Q32M92 178 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 FAM110DQ8TAY7 271 aaPredicted RBP9.37□□□□□ -0.91
SHMT2-207ENST00000553837 IGHV3OR16-10A0A075B7F0 116 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 H7C1H1 209 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 PSMB2P49721 201 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 ZNF80P51504 273 aaPredicted RBP9.37□□□□□ -0.91
SHMT2-207ENST00000553837 LYRM7Q5U5X0 104 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 GLMPQ8WWB7 406 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 USP24Q9UPU5 2620 aa9.37□□□□□ -0.91
SHMT2-207ENST00000553837 CSDC2Q9Y534 153 aaKnown RBP9.37□□□□□ -0.91
SHMT2-207ENST00000553837 KMT2BQ9UMN6 2715 aaPredicted RBP9.36□□□□□ -0.91
SHMT2-207ENST00000553837 TRAV12-1A0A0B4J245 112 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 NPFFO15130 113 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 SNCGO76070 127 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 ZNF575Q86XF7 245 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 Q8TAT8 98 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 CCDC140Q96MF4 163 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 ZFAND3Q9H8U3 227 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 SPTAN1Q13813 2472 aaKnown RBP9.36□□□□□ -0.91
SHMT2-207ENST00000553837 GATA1P15976 413 aaPredicted RBP9.36□□□□□ -0.91
SHMT2-207ENST00000553837 TMEM219Q86XT9 240 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 PPDPFQ9H3Y8 114 aa9.36□□□□□ -0.91
SHMT2-207ENST00000553837 LOC107984156A0A0G2JMH3 177 aa9.35□□□□□ -0.91
SHMT2-207ENST00000553837 CLPSL1A2RUU4 121 aa9.35□□□□□ -0.91
SHMT2-207ENST00000553837 F8VRH5 84 aa9.35□□□□□ -0.91
SHMT2-207ENST00000553837 RPL7P18124 248 aaKnown RBP9.35□□□□□ -0.91
SHMT2-207ENST00000553837 KLK9Q2XQG4 91 aa9.35□□□□□ -0.91
SHMT2-207ENST00000553837 ARL17AQ8IVW1 177 aa9.35□□□□□ -0.91
SHMT2-207ENST00000553837 KLK9Q9UKQ9 250 aa9.35□□□□□ -0.91
SHMT2-207ENST00000553837 IGHV3-66A0A0C4DH42 116 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 LINC01549A6NIU2 74 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 CARD19Q96LW7 228 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 AGRNO00468 2067 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 IGHV3OR16-13A0A075B7E8 117 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 IGHV3-74A0A0B4J1X5 117 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 PRAC2D3DTV9 90 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 TMEM78Q5T7P6 136 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 CLEC19AQ6UXS0 136 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 C5orf56Q8N8D9 126 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 DNAJC30Q96LL9 226 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 PSMG3-AS1Q96PY0 264 aa9.34□□□□□ -0.91
SHMT2-207ENST00000553837 CELSR2Q9HCU4 2923 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 LGALS1P09382 135 aaKnown RBP9.33□□□□□ -0.92
SHMT2-207ENST00000553837 LINC00527Q9UJ94 153 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 MAP1AP78559 2803 aaPredicted RBP9.33□□□□□ -0.92
SHMT2-207ENST00000553837 TRBV20-1A0A075B6N2 111 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 IGHV4-61A0A0C4DH41 118 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 BUB3O43684 328 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 SCGB2A1O75556 95 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 UBE2D1P51668 147 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 UBE2D3P61077 147 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 UBE2D2P62837 147 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 ERCC8Q13216 396 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 MEIG1Q5JSS6 88 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 BRD3OSQ6XYD6 125 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 ZFP2Q6ZN57 461 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 RNF182Q8N6D2 247 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 MDFICQ9P1T7 246 aa9.33□□□□□ -0.92
SHMT2-207ENST00000553837 IGHV3-49A0A0A0MS15 119 aa9.32□□□□□ -0.92
SHMT2-207ENST00000553837 A8MWV9 139 aa9.32□□□□□ -0.92
SHMT2-207ENST00000553837 SBSPONQ8IVN8 264 aa9.32□□□□□ -0.92
SHMT2-207ENST00000553837 OR10J6PQ8NGY7 276 aa9.32□□□□□ -0.92
SHMT2-207ENST00000553837 FLNCQ14315 2725 aa9.32□□□□□ -0.92
SHMT2-207ENST00000553837 SRSF9Q13242 221 aaKnown RBP eCLIP9.31□□□□□ -0.92
SHMT2-207ENST00000553837 FAM159AQ6UWV7 190 aa9.31□□□□□ -0.92
SHMT2-207ENST00000553837 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.31□□□□□ -0.92
SHMT2-207ENST00000553837 NRACQ8N912 160 aa9.31□□□□□ -0.92
SHMT2-207ENST00000553837 UTP20O75691 2785 aaKnown RBP9.31□□□□□ -0.92
SHMT2-207ENST00000553837 IL17RELQ6ZVW7 336 aa9.31□□□□□ -0.92
SHMT2-207ENST00000553837 EPG5Q9HCE0 2579 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms