RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 C9orf85Q96MD7 179 aa8.61□□□□□ -1.03
LINC00643-202ENST00000553426 C11orf21Q9P2W6 132 aa8.61□□□□□ -1.03
LINC00643-202ENST00000553426 FXYD6-FXYD2A0A087WZ82 144 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 CTXND1A0A1B0GTU2 59 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 FABP5P3A8MUU1 101 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 A8MWV9 139 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 GCSHP23434 173 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 ZNF506Q5JVG8 444 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 LELP1Q5T871 98 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 ATP6V0E2Q8NHE4 81 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 GTSF1LQ9H1H1 148 aa8.6□□□□□ -1.03
LINC00643-202ENST00000553426 PGPEP1LA6NFU8 196 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 IBA57-AS1B1ANH7 110 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 ASIPP42127 132 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 LGALSLQ3ZCW2 172 aaPredicted RBP8.59□□□□□ -1.03
LINC00643-202ENST00000553426 AKR1C8PQ5T2L2 129 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 RPL7L1Q6DKI1 246 aaKnown RBP8.59□□□□□ -1.03
LINC00643-202ENST00000553426 DPPA3Q6W0C5 159 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 ZFP2Q6ZN57 461 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 FRZBQ92765 325 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 ARL2-SNX15V9GYD0 113 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 MYCBP2O75592 4640 aa8.59□□□□□ -1.03
LINC00643-202ENST00000553426 IGLV5-52A0A0A0MRZ9 124 aa8.58□□□□□ -1.04
LINC00643-202ENST00000553426 TRAV34A0A0B4J273 112 aa8.58□□□□□ -1.04
LINC00643-202ENST00000553426 RNASE3P12724 160 aaKnown RBP8.58□□□□□ -1.04
LINC00643-202ENST00000553426 UBE2G2P60604 165 aa8.58□□□□□ -1.04
LINC00643-202ENST00000553426 Q5BKY6 102 aa8.58□□□□□ -1.04
LINC00643-202ENST00000553426 PIK3CD-AS1Q5SR53 167 aa8.58□□□□□ -1.04
LINC00643-202ENST00000553426 OR2T35Q8NGX2 323 aa8.58□□□□□ -1.04
LINC00643-202ENST00000553426 NTN5Q8WTR8 489 aaPredicted RBP8.58□□□□□ -1.04
LINC00643-202ENST00000553426 HIST1H2BAQ96A08 127 aa8.58□□□□□ -1.04
LINC00643-202ENST00000553426 Q9HAA7 133 aa8.58□□□□□ -1.04
LINC00643-202ENST00000553426 RNF222A6NCQ9 220 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 PEX7O00628 323 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 IGHV3-30P01768 117 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 IGHV3-33P01772 117 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 IGHV3-30-3P0DP02 117 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 IGHV3-30-5P0DP03 117 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 FGF8P55075 233 aaPredicted RBP8.57□□□□□ -1.04
LINC00643-202ENST00000553426 KRTAP10-1P60331 282 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 SYT8Q8NBV8 401 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 LINC00479Q96M42 142 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 TM2D2Q9BX73 214 aa8.57□□□□□ -1.04
LINC00643-202ENST00000553426 IGKV3D-20A0A0C4DH25 116 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 B4DEV8 164 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 XGP55808 180 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 UBE2G1P62253 170 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 LAGE3Q14657 143 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 STOML3Q8TAV4 291 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 PARLQ9H300 379 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 IL36BQ9NZH7 164 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 ZFP30Q9Y2G7 519 aa8.56□□□□□ -1.04
LINC00643-202ENST00000553426 A0A087WWC5 75 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 GAGE12JA6NER3 117 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 FAM74A7A6NL05 159 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 RHODO00212 210 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 GAGE1Q13065 139 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 GAGE4Q13068 117 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 GAGE5Q13069 117 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 ZNF726P1Q15940 193 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 GAGE13Q4V321 117 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 TOR2AQ5JU69 321 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 Q86TA4 180 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 FMC1Q96HJ9 113 aa8.55□□□□□ -1.04
LINC00643-202ENST00000553426 TRAV8-3A0A0A6YYJ7 113 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 MAP1LC3B2A6NCE7 125 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 H3BVH4 76 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 INAFM2P0DMQ5 153 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 FAM162BQ5T6X4 162 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 Q5VSD8 79 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 OR11H4Q8NGC9 324 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 TCEAL7Q9BRU2 100 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 MAP1LC3BQ9GZQ8 125 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 PHLDA3Q9Y5J5 127 aa8.54□□□□□ -1.04
LINC00643-202ENST00000553426 LRCOL1A6NCL2 159 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 FAM229AH3BQW9 127 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 M0R036 132 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 ARPC5O15511 151 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 ARMS2P0C7Q2 107 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 SEC11BP0C7V7 166 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 FAM74A4Q5TZK3 123 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 CST9LP1Q5W188 147 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 Q8N814 137 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 ZC2HC1AQ96GY0 325 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 TMEM70Q9BUB7 260 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 URGCP-MRPS24S4R325 110 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 UBR4Q5T4S7 5183 aa8.53□□□□□ -1.04
LINC00643-202ENST00000553426 KRBOX1C9JBD0 128 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 SH2D1AO60880 128 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 TPT1P13693 172 aaKnown RBP8.52□□□□□ -1.05
LINC00643-202ENST00000553426 FHITP49789 147 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 RGS21Q2M5E4 152 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 DNLZQ5SXM8 178 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 DMRTA1Q5VZB9 504 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 KCNIP4Q6PIL6 250 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 Q6ZSN1 163 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 COX11Q9Y6N1 276 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 VPS13BQ7Z7G8 4022 aa8.52□□□□□ -1.05
LINC00643-202ENST00000553426 GRIFINA4D1Z8 144 aa8.51□□□□□ -1.05
LINC00643-202ENST00000553426 SMR3BP02814 79 aaPredicted RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms