RNA–Protein interactions for RNA: ENST00000550857.5

PTPRB-209, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-209ENST00000550857 RNASE7Q9H1E1 156 aaKnown RBP6.19□□□□□ -1.42
PTPRB-209ENST00000550857 TP53TG1Q9Y2A0 90 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 LRP4O75096 1905 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 BOD1L2Q8IYS8 172 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 DSCAMO60469 2012 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 WI2-2373I1.2A0A1W2PRP0 233 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 PAX2Q02962 417 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 AGPAT4-IT1Q9H0P7 198 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 RNF222A6NCQ9 220 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 DIAPH2-AS1Q14236 149 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 AMTNQ6UX39 209 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 CHCHD7Q9BUK0 85 aa6.19□□□□□ -1.42
PTPRB-209ENST00000550857 D6R8Y8 96 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 SIVA1O15304 175 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 K7EQG2 157 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 IGKV1-39P01597 117 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 IGKV1D-39P04432 117 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 STPG4Q8N801 248 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 TRBV7-3A0A075B6L6 115 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 TRAV8-4A0A0B4J246 113 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 BRI3O95415 125 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 FAM110AQ9BQ89 295 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 CARHSP1Q9Y2V2 147 aaKnown RBP6.18□□□□□ -1.42
PTPRB-209ENST00000550857 SMIM6P0DI80 62 aa6.18□□□□□ -1.42
PTPRB-209ENST00000550857 C11orf68Q9H3H3 251 aaKnown RBP6.18□□□□□ -1.42
PTPRB-209ENST00000550857 ZNF706Q9Y5V0 76 aaPredicted RBP6.18□□□□□ -1.42
PTPRB-209ENST00000550857 K7EP13 123 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 FAM104BQ5XKR9 115 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 SLC25A29Q8N8R3 303 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 Q8N976 141 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 ERG28Q9UKR5 140 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 NOTCH3Q9UM47 2321 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 MYO18BQ8IUG5 2567 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 TRAV13-2A0A0B4J235 113 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 hDV102S1A0JD36 115 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 IGLV2-23P01705 113 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 CRYGDP07320 174 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 CITED1Q99966 193 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 CCDC168Q8NDH2 2452 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 GAGE10A6NGK3 116 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 IGHV3-30P01768 117 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 IGHV3-33P01772 117 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 IGHV3-30-3P0DP02 117 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 IGHV3-30-5P0DP03 117 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 RPL18AQ02543 176 aaKnown RBP6.17□□□□□ -1.42
PTPRB-209ENST00000550857 IGFL4Q6B9Z1 124 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 C2orf66Q6UXQ4 117 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 GATD1Q8NB37 220 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 BBC3Q96PG8 261 aaPredicted RBP6.17□□□□□ -1.42
PTPRB-209ENST00000550857 PRR20EP86478 221 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 PRR20CP86479 221 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 PRR20DP86480 221 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 PRR20BP86481 221 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 PRR20AP86496 221 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 SPATA45Q537H7 98 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 PAM16Q9Y3D7 125 aa6.17□□□□□ -1.42
PTPRB-209ENST00000550857 TEX22C9J3V5 150 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 IGKV1-17P01599 117 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 FAM222AQ5U5X8 452 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 COL4A2P08572 1712 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 LINC01545Q5VT33 79 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 SELENOKQ9Y6D0 94 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 ATG2AQ2TAZ0 1938 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 Q6ZRM9 215 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 GTSF1LQ9H1H1 148 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 VSIRQ9H7M9 311 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 ORAOV1Q8WV07 137 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 TRBV6-1A0A0K0K1D8 114 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 PSMB8P28062 276 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 COL5A1-AS1Q5SY13 56 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 C11orf52Q96A22 123 aa6.16□□□□□ -1.42
PTPRB-209ENST00000550857 RBMY1FQ15415 496 aaKnown RBP6.15□□□□□ -1.42
PTPRB-209ENST00000550857 PCDH15Q96QU1 1955 aa6.15□□□□□ -1.42
PTPRB-209ENST00000550857 IGHV1-58A0A0C4DH39 117 aa6.15□□□□□ -1.42
PTPRB-209ENST00000550857 MLANAQ16655 118 aa6.15□□□□□ -1.42
PTPRB-209ENST00000550857 FREM1Q5H8C1 2179 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 Q6ZQT7 251 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 ZNF479Q96JC4 524 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 A0A096LPF7 62 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 A0A0G2JRQ6 117 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 NDUFB1O75438 58 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 MIAQ16674 131 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 TMEM170AQ8WVE7 144 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 MED13LQ71F56 2210 aa6.15□□□□□ -1.43
PTPRB-209ENST00000550857 LINC01551Q86U37 167 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 DMRT1Q9Y5R6 373 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 IGF2RP11717 2491 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 BTCP35070 178 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 UBE2D1P51668 147 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 MRGPRG-AS1Q2M3A8 158 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 GFI1BQ5VTD9 330 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 FXYD5Q96DB9 178 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 YLPM1P49750 1951 aaKnown RBP6.14□□□□□ -1.43
PTPRB-209ENST00000550857 VPS25Q9BRG1 176 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 WWC2-AS2Q96NR7 200 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 FNDC4Q9H6D8 234 aaPredicted RBP6.14□□□□□ -1.43
PTPRB-209ENST00000550857 LY6LH3BQJ8 138 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 ZFAND6Q6FIF0 208 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 NUP210LQ5VU65 1888 aa6.14□□□□□ -1.43
PTPRB-209ENST00000550857 TRBV24-1A0A075B6N3 115 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms