RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 WRBO00258 174 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 IGLC2P0DOY2 106 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 GATA1P15976 413 aaPredicted RBP4.09□□□□□ -1.75
LIMA1-204ENST00000549064 AKR1C4P17516 323 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 LINC00305Q7Z4B0 112 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 BPIFA4PQ86YQ2 179 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 HSD17B11Q8NBQ5 300 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 OR4C5Q8NGB2 326 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 RASL10AQ92737 203 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 COMMD3Q9UBI1 195 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 CSDC2Q9Y534 153 aaKnown RBP4.09□□□□□ -1.75
LIMA1-204ENST00000549064 PXMP4Q9Y6I8 212 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 TRAV8-1A0A0A6YYK1 113 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 A0A0B4J2A0 478 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 SMIM31A0A1B0GVY4 71 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 GGTLC3B5MD39 225 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 PITX3O75364 302 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 RAB3DO95716 219 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 PFN1P07737 140 aaKnown RBP4.08□□□□□ -1.76
LIMA1-204ENST00000549064 CRISP2P16562 243 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 RRAS2P62070 204 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-204ENST00000549064 SLC38A11Q08AI6 406 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 TMEM183BQ1AE95 376 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 SPANXN5Q5MJ07 72 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 TMEM183AQ8IXX5 376 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 SLC25A29Q8N8R3 303 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 GTSF1LQ9H1H1 148 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 SHPKQ9UHJ6 478 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 KIF25-AS1Q9Y6Z4 181 aa4.08□□□□□ -1.76
LIMA1-204ENST00000549064 IGKV2-40A0A087WW87 121 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-204ENST00000549064 PHOX2AO14813 284 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 HPGDSO60760 199 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 IGKV2D-40P01614 121 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-204ENST00000549064 APOA1P02647 267 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 TBPP20226 339 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 GABARAPL2P60520 117 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 LSM3P62310 102 aaKnown RBP4.07□□□□□ -1.76
LIMA1-204ENST00000549064 SPANXN2Q5MJ10 180 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 UFSP1Q6NVU6 142 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 TMUB2Q71RG4 321 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 Q8TAT8 98 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 UBE2WQ96B02 151 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 RMI2Q96E14 147 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 SRRQ9GZT4 340 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 DHRS4-AS1Q9P1J3 65 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 MTFP1Q9UDX5 166 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 KLK12Q9UKR0 248 aa4.07□□□□□ -1.76
LIMA1-204ENST00000549064 FSIP2Q5CZC0 6907 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 IGHV3-73A0A0B4J1V6 119 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 FABP12A6NFH5 140 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 SYNGR2O43760 224 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 TAS2R19P59542 299 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 UBE2MP61081 183 aaKnown RBP4.06□□□□□ -1.76
LIMA1-204ENST00000549064 SELENOTP62341 195 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 RHOHQ15669 191 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 SDIM1Q6ZPB5 146 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 EXOC3-AS1Q8N2X6 119 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 Q8N377 158 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 C9orf163Q8N9P6 203 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 TMEM229BQ8NBD8 167 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 RAB2BQ8WUD1 216 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 PRADC1Q9BSG0 188 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 CRCT1Q9UGL9 99 aa4.06□□□□□ -1.76
LIMA1-204ENST00000549064 FAM25AB3EWG3 89 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 FAM25CB3EWG5 89 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 FAM25GB3EWG6 89 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 AGPAT2O15120 278 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 COX7A2P2O60397 106 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 ZNF253O75346 499 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 MED6O75586 246 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 OR10J4P0C629 311 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 CHTF8P0CG12 524 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 SURF2Q15527 256 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-204ENST00000549064 C14orf177Q52M58 125 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 S100A7AQ86SG5 101 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 OR51S1Q8NGJ8 323 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 ZC2HC1AQ96GY0 325 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 LINC00479Q96M42 142 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 CIB3Q96Q77 187 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-204ENST00000549064 SOSTQ9BQB4 213 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 ZNF492Q9P255 531 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 NAGKQ9UJ70 344 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 KCNIP3Q9Y2W7 256 aa4.05□□□□□ -1.76
LIMA1-204ENST00000549064 TRBV19A0A075B6N1 114 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 TRBV6-4A0A1B0GX49 114 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 DISC1C4P0D8 188 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 K7EPK0 472 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 M0R2P5 195 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 GOSR2O14653 212 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 GNRH2O43555 120 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 HLA-DQA1P01909 254 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 NMBP08949 121 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 STAG3L3P0CL85 134 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 RPL29P47914 159 aaKnown RBP4.04□□□□□ -1.76
LIMA1-204ENST00000549064 CIRBPQ14011 172 aaKnown RBP4.04□□□□□ -1.76
LIMA1-204ENST00000549064 NEDD8Q15843 81 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 GUK1Q16774 197 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 TMEM78Q5T7P6 136 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 C10orf113Q5VZT2 155 aa4.04□□□□□ -1.76
LIMA1-204ENST00000549064 DPPA3Q6W0C5 159 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms