RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 EDN2P20800 178 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 FBXL19-AS1Q494R0 122 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 OR5A1Q8NGJ0 315 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 J3QR89 54 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 PRADC1Q9BSG0 188 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 RAB9AP51151 201 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 C8orf86Q6ZUL3 223 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 METTL26Q96S19 204 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 NXT2Q9NPJ8 142 aaKnown RBP11.26□□□□□ -0.61
HOXC11-202ENST00000546378 F8W735 103 aaPredicted RBP11.25□□□□□ -0.61
HOXC11-202ENST00000546378 KIR2DL4Q99706 377 aa11.25□□□□□ -0.61
HOXC11-202ENST00000546378 PRM2P04554 102 aa11.25□□□□□ -0.61
HOXC11-202ENST00000546378 TMEM30BQ3MIR4 351 aa11.25□□□□□ -0.61
HOXC11-202ENST00000546378 IGLV11-55A0A075B6I3 123 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 IGHV7-81A0A0B4J1V7 117 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 PRSS29PA6NIE9 313 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 HOXA3O43365 443 aaPredicted RBP11.24□□□□□ -0.61
HOXC11-202ENST00000546378 DUSP14O95147 198 aaKnown RBP11.24□□□□□ -0.61
HOXC11-202ENST00000546378 IGHV4-39P01824 125 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 CKS1BP61024 79 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 DPF1Q92782 380 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 NIPBLQ6KC79 2804 aaeCLIP11.24□□□□□ -0.61
HOXC11-202ENST00000546378 OVOL3O00110 214 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 IGHG4P01861 327 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 SAA4P35542 130 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 UNQ9165/PRO28630Q6UXU0 137 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 C3orf56Q8N813 242 aa11.24□□□□□ -0.61
HOXC11-202ENST00000546378 TRAV2A0A0B4J234 112 aa11.23□□□□□ -0.61
HOXC11-202ENST00000546378 TRAV12-3A0A0B4J271 114 aa11.23□□□□□ -0.61
HOXC11-202ENST00000546378 NDUFS8O00217 210 aa11.23□□□□□ -0.61
HOXC11-202ENST00000546378 SCGB2A1O75556 95 aa11.23□□□□□ -0.61
HOXC11-202ENST00000546378 TMEM95Q3KNT9 176 aa11.23□□□□□ -0.61
HOXC11-202ENST00000546378 C2orf66Q6UXQ4 117 aa11.23□□□□□ -0.61
HOXC11-202ENST00000546378 FASNP49327 2511 aaKnown RBP11.23□□□□□ -0.61
HOXC11-202ENST00000546378 A0A1B0GW15 77 aa11.23□□□□□ -0.61
HOXC11-202ENST00000546378 MRPS12O15235 138 aaKnown RBP11.23□□□□□ -0.61
HOXC11-202ENST00000546378 CIDEAO60543 219 aa11.23□□□□□ -0.61
HOXC11-202ENST00000546378 SRSF1Q07955 248 aaKnown RBP eCLIP11.22□□□□□ -0.61
HOXC11-202ENST00000546378 NBEAL2Q6ZNJ1 2754 aa11.22□□□□□ -0.61
HOXC11-202ENST00000546378 MAPK1IP1LQ8NDC0 245 aa11.22□□□□□ -0.61
HOXC11-202ENST00000546378 NRGNQ92686 78 aa11.22□□□□□ -0.61
HOXC11-202ENST00000546378 ATP5LO75964 103 aa11.21□□□□□ -0.61
HOXC11-202ENST00000546378 CCDC144NLQ6NUI1 221 aa11.21□□□□□ -0.61
HOXC11-202ENST00000546378 ZNF493Q6ZR52 646 aa11.21□□□□□ -0.61
HOXC11-202ENST00000546378 KNCNA6PVL3 124 aa11.21□□□□□ -0.62
HOXC11-202ENST00000546378 INS-IGF2F8WCM5 200 aa11.21□□□□□ -0.62
HOXC11-202ENST00000546378 ZNF56Q15929 161 aa11.21□□□□□ -0.62
HOXC11-202ENST00000546378 FOXI2Q6ZQN5 318 aa11.21□□□□□ -0.62
HOXC11-202ENST00000546378 TRAV26-1A0A087WT03 109 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 BUB3O43684 328 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 CD7P09564 240 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 SPINK8P0C7L1 97 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 IGLC6P0CF74 106 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 RPS20P60866 119 aaKnown RBP11.2□□□□□ -0.62
HOXC11-202ENST00000546378 KLK9Q9UKQ9 250 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 LYPD1Q8N2G4 141 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 Q8N8P6 123 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 BPESC1Q9GZL8 116 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 TP53TG1Q9Y2A0 90 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 ZNF688P0C7X2 276 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 C20orf173Q96LM9 149 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 KAAG1Q9UBP8 84 aa11.2□□□□□ -0.62
HOXC11-202ENST00000546378 MT-ATP8P03928 68 aa11.19□□□□□ -0.62
HOXC11-202ENST00000546378 SUMO2P61956 95 aaKnown RBP11.19□□□□□ -0.62
HOXC11-202ENST00000546378 OR10J6PQ8NGY7 276 aa11.19□□□□□ -0.62
HOXC11-202ENST00000546378 SPANXB1Q9NS25 103 aaPredicted RBP11.19□□□□□ -0.62
HOXC11-202ENST00000546378 TRBV20-1A0A075B6N2 111 aa11.19□□□□□ -0.62
HOXC11-202ENST00000546378 A0A1B0GV72 72 aa11.19□□□□□ -0.62
HOXC11-202ENST00000546378 PDE6HQ13956 83 aa11.18□□□□□ -0.62
HOXC11-202ENST00000546378 MYMXA0A1B0GTQ4 84 aa11.18□□□□□ -0.62
HOXC11-202ENST00000546378 Q6ZS46 218 aa11.18□□□□□ -0.62
HOXC11-202ENST00000546378 TRPT1Q86TN4 253 aaKnown RBP11.18□□□□□ -0.62
HOXC11-202ENST00000546378 KHDC1LQ5JSQ8 128 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 CCDC140Q96MF4 163 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 SMIM2Q9BVW6 85 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 ZNF580Q9UK33 172 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 A0A087WX48 190 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 H7C1H1 209 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 CEMP1Q6PRD7 247 aaPredicted RBP11.17□□□□□ -0.62
HOXC11-202ENST00000546378 ZNF625Q96I27 306 aaPredicted RBP11.17□□□□□ -0.62
HOXC11-202ENST00000546378 TNFRSF13BO14836 293 aaPredicted RBP11.17□□□□□ -0.62
HOXC11-202ENST00000546378 ASIPP42127 132 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 RRN3P1Q2M238 152 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 Q8N9W7 124 aa11.17□□□□□ -0.62
HOXC11-202ENST00000546378 F8VRH5 84 aa11.16□□□□□ -0.62
HOXC11-202ENST00000546378 PAX8Q06710 450 aa11.16□□□□□ -0.62
HOXC11-202ENST00000546378 TNFRSF14Q92956 283 aa11.16□□□□□ -0.62
HOXC11-202ENST00000546378 LGALS1P09382 135 aaKnown RBP11.16□□□□□ -0.62
HOXC11-202ENST00000546378 TRAV8-2A0A0B4J237 113 aa11.15□□□□□ -0.62
HOXC11-202ENST00000546378 C11orf86A6NJI1 115 aa11.15□□□□□ -0.62
HOXC11-202ENST00000546378 C9JAW5 83 aa11.15□□□□□ -0.62
HOXC11-202ENST00000546378 BLCAPP62952 87 aa11.15□□□□□ -0.62
HOXC11-202ENST00000546378 DAND5Q8N907 189 aa11.15□□□□□ -0.62
HOXC11-202ENST00000546378 GATD1Q8NB37 220 aa11.15□□□□□ -0.62
HOXC11-202ENST00000546378 DUX3Q96PT4 197 aa11.15□□□□□ -0.62
HOXC11-202ENST00000546378 SPXQ9BT56 116 aa11.15□□□□□ -0.62
HOXC11-202ENST00000546378 GEMIN7Q9H840 131 aaKnown RBP11.15□□□□□ -0.62
HOXC11-202ENST00000546378 IGHV3OR16-12A0A075B7B8 117 aa11.15□□□□□ -0.63
HOXC11-202ENST00000546378 A8MZ25 164 aa11.15□□□□□ -0.63
HOXC11-202ENST00000546378 U3KQK5 164 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms