RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 IGLV2-11P01706 119 aa8.86□□□□□ -0.99
RTN3-212ENST00000543123 S100A4P26447 101 aaKnown RBP8.86□□□□□ -0.99
RTN3-212ENST00000543123 ZNF506Q5JVG8 444 aa8.86□□□□□ -0.99
RTN3-212ENST00000543123 PIK3CD-AS1Q5SR53 167 aa8.86□□□□□ -0.99
RTN3-212ENST00000543123 C11orf21Q9P2W6 132 aa8.86□□□□□ -0.99
RTN3-212ENST00000543123 FXYD6-FXYD2A0A087WZ82 144 aa8.85□□□□□ -0.99
RTN3-212ENST00000543123 CTXND1A0A1B0GTU2 59 aa8.85□□□□□ -0.99
RTN3-212ENST00000543123 A8MWV9 139 aa8.85□□□□□ -0.99
RTN3-212ENST00000543123 LELP1Q5T871 98 aa8.85□□□□□ -0.99
RTN3-212ENST00000543123 ZFP2Q6ZN57 461 aa8.85□□□□□ -0.99
RTN3-212ENST00000543123 NTN5Q8WTR8 489 aaPredicted RBP8.85□□□□□ -0.99
RTN3-212ENST00000543123 GTSF1LQ9H1H1 148 aa8.85□□□□□ -0.99
RTN3-212ENST00000543123 IGHV3-73A0A0B4J1V6 119 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 FABP5P3A8MUU1 101 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 IBA57-AS1B1ANH7 110 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 GCSHP23434 173 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 ASIPP42127 132 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 LAGE3Q14657 143 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 RGS21Q2M5E4 152 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 AKR1C8PQ5T2L2 129 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 RPL7L1Q6DKI1 246 aaKnown RBP8.84□□□□□ -0.99
RTN3-212ENST00000543123 ATP6V0E2Q8NHE4 81 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 FRZBQ92765 325 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 HIST1H2BAQ96A08 127 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 ARL2-SNX15V9GYD0 113 aa8.84□□□□□ -0.99
RTN3-212ENST00000543123 PGPEP1LA6NFU8 196 aa8.83□□□□□ -1
RTN3-212ENST00000543123 PEX7O00628 323 aa8.83□□□□□ -1
RTN3-212ENST00000543123 RNASE3P12724 160 aaKnown RBP8.83□□□□□ -1
RTN3-212ENST00000543123 FUSP35637 526 aaKnown RBP eCLIP8.83□□□□□ -1
RTN3-212ENST00000543123 DPPA3Q6W0C5 159 aa8.83□□□□□ -1
RTN3-212ENST00000543123 SYT8Q8NBV8 401 aa8.83□□□□□ -1
RTN3-212ENST00000543123 IGLV5-52A0A0A0MRZ9 124 aa8.82□□□□□ -1
RTN3-212ENST00000543123 RNF222A6NCQ9 220 aa8.82□□□□□ -1
RTN3-212ENST00000543123 RHODO00212 210 aa8.82□□□□□ -1
RTN3-212ENST00000543123 UBE2G2P60604 165 aa8.82□□□□□ -1
RTN3-212ENST00000543123 LGALSLQ3ZCW2 172 aaPredicted RBP8.82□□□□□ -1
RTN3-212ENST00000543123 Q86TA4 180 aa8.82□□□□□ -1
RTN3-212ENST00000543123 OR2T35Q8NGX2 323 aa8.82□□□□□ -1
RTN3-212ENST00000543123 TCEAL7Q9BRU2 100 aa8.82□□□□□ -1
RTN3-212ENST00000543123 TM2D2Q9BX73 214 aa8.82□□□□□ -1
RTN3-212ENST00000543123 PARLQ9H300 379 aa8.82□□□□□ -1
RTN3-212ENST00000543123 Q9HAA7 133 aa8.82□□□□□ -1
RTN3-212ENST00000543123 IL36BQ9NZH7 164 aa8.82□□□□□ -1
RTN3-212ENST00000543123 A0A087WWC5 75 aa8.81□□□□□ -1
RTN3-212ENST00000543123 TRAV34A0A0B4J273 112 aa8.81□□□□□ -1
RTN3-212ENST00000543123 B4DEV8 164 aa8.81□□□□□ -1
RTN3-212ENST00000543123 FGF8P55075 233 aaPredicted RBP8.81□□□□□ -1
RTN3-212ENST00000543123 KRTAP10-1P60331 282 aa8.81□□□□□ -1
RTN3-212ENST00000543123 Q5BKY6 102 aa8.81□□□□□ -1
RTN3-212ENST00000543123 TOR2AQ5JU69 321 aa8.81□□□□□ -1
RTN3-212ENST00000543123 STOML3Q8TAV4 291 aa8.81□□□□□ -1
RTN3-212ENST00000543123 LINC00479Q96M42 142 aa8.81□□□□□ -1
RTN3-212ENST00000543123 ZFP30Q9Y2G7 519 aa8.81□□□□□ -1
RTN3-212ENST00000543123 IGKV3D-20A0A0C4DH25 116 aa8.8□□□□□ -1
RTN3-212ENST00000543123 FAM74A7A6NL05 159 aa8.8□□□□□ -1
RTN3-212ENST00000543123 IGHV3-30P01768 117 aa8.8□□□□□ -1
RTN3-212ENST00000543123 IGHV3-33P01772 117 aa8.8□□□□□ -1
RTN3-212ENST00000543123 IGHV3-30-3P0DP02 117 aa8.8□□□□□ -1
RTN3-212ENST00000543123 IGHV3-30-5P0DP03 117 aa8.8□□□□□ -1
RTN3-212ENST00000543123 XGP55808 180 aa8.8□□□□□ -1
RTN3-212ENST00000543123 UBE2G1P62253 170 aa8.8□□□□□ -1
RTN3-212ENST00000543123 ZNF726P1Q15940 193 aa8.8□□□□□ -1
RTN3-212ENST00000543123 FAM162BQ5T6X4 162 aa8.8□□□□□ -1
RTN3-212ENST00000543123 OR11H4Q8NGC9 324 aa8.8□□□□□ -1
RTN3-212ENST00000543123 FMC1Q96HJ9 113 aa8.8□□□□□ -1
RTN3-212ENST00000543123 TMEM70Q9BUB7 260 aa8.8□□□□□ -1
RTN3-212ENST00000543123 TRAV8-3A0A0A6YYJ7 113 aa8.79□□□□□ -1
RTN3-212ENST00000543123 MAP1LC3B2A6NCE7 125 aa8.79□□□□□ -1
RTN3-212ENST00000543123 LRCOL1A6NCL2 159 aa8.79□□□□□ -1
RTN3-212ENST00000543123 H3BVH4 76 aa8.79□□□□□ -1
RTN3-212ENST00000543123 SEC11BP0C7V7 166 aa8.79□□□□□ -1
RTN3-212ENST00000543123 Q5VSD8 79 aa8.79□□□□□ -1
RTN3-212ENST00000543123 Q8N814 137 aa8.79□□□□□ -1
RTN3-212ENST00000543123 MAP1LC3BQ9GZQ8 125 aa8.79□□□□□ -1
RTN3-212ENST00000543123 GAGE12JA6NER3 117 aa8.78□□□□□ -1
RTN3-212ENST00000543123 FAM229AH3BQW9 127 aa8.78□□□□□ -1
RTN3-212ENST00000543123 INAFM2P0DMQ5 153 aa8.78□□□□□ -1
RTN3-212ENST00000543123 FHITP49789 147 aa8.78□□□□□ -1
RTN3-212ENST00000543123 GAGE1Q13065 139 aa8.78□□□□□ -1
RTN3-212ENST00000543123 GAGE4Q13068 117 aa8.78□□□□□ -1
RTN3-212ENST00000543123 GAGE5Q13069 117 aa8.78□□□□□ -1
RTN3-212ENST00000543123 GAGE13Q4V321 117 aa8.78□□□□□ -1
RTN3-212ENST00000543123 DNLZQ5SXM8 178 aa8.78□□□□□ -1
RTN3-212ENST00000543123 COX8CQ7Z4L0 72 aa8.78□□□□□ -1
RTN3-212ENST00000543123 ZC2HC1AQ96GY0 325 aa8.78□□□□□ -1
RTN3-212ENST00000543123 PHLDA3Q9Y5J5 127 aa8.78□□□□□ -1
RTN3-212ENST00000543123 COX11Q9Y6N1 276 aa8.78□□□□□ -1
RTN3-212ENST00000543123 URGCP-MRPS24S4R325 110 aa8.78□□□□□ -1
RTN3-212ENST00000543123 VPS13BQ7Z7G8 4022 aa8.77□□□□□ -1.01
RTN3-212ENST00000543123 KRBOX1C9JBD0 128 aa8.77□□□□□ -1.01
RTN3-212ENST00000543123 M0R036 132 aa8.77□□□□□ -1.01
RTN3-212ENST00000543123 ARPC5O15511 151 aa8.77□□□□□ -1.01
RTN3-212ENST00000543123 SH2D1AO60880 128 aa8.77□□□□□ -1.01
RTN3-212ENST00000543123 LINC00694P0DN24 101 aa8.77□□□□□ -1.01
RTN3-212ENST00000543123 TPT1P13693 172 aaKnown RBP8.77□□□□□ -1.01
RTN3-212ENST00000543123 RMI2Q96E14 147 aa8.77□□□□□ -1.01
RTN3-212ENST00000543123 FAT1Q14517 4588 aa8.77□□□□□ -1.01
RTN3-212ENST00000543123 TRBV6-1A0A0K0K1D8 114 aa8.76□□□□□ -1.01
RTN3-212ENST00000543123 ARMS2P0C7Q2 107 aa8.76□□□□□ -1.01
RTN3-212ENST00000543123 FAM74A4Q5TZK3 123 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms