RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 GAGE10A6NGK3 116 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 ZFAND2AQ8N6M9 145 aa8.17□□□□□ -1.1
CLIP1-213ENST00000540338 MED14OSP0DP75 135 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 DEFB136Q30KP8 78 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 ZNF876PQ49A33 203 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 PAPPA-AS1Q5QFB9 102 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 C2orf66Q6UXQ4 117 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 FOXI2Q6ZQN5 318 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 CCDC168Q8NDH2 2452 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 C10orf99Q6UWK7 81 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 STHQ8IWL8 128 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 RNF185Q96GF1 192 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 CNFNQ9BYD5 112 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 KLK9Q2XQG4 91 aa8.16□□□□□ -1.1
CLIP1-213ENST00000540338 TMEM170BQ5T4T1 132 aa8.15□□□□□ -1.1
CLIP1-213ENST00000540338 ERASQ7Z444 233 aa8.15□□□□□ -1.1
CLIP1-213ENST00000540338 SMIM13P0DJ93 91 aa8.15□□□□□ -1.1
CLIP1-213ENST00000540338 SLURP1P55000 103 aa8.15□□□□□ -1.1
CLIP1-213ENST00000540338 SCRT2Q9NQ03 307 aa8.15□□□□□ -1.1
CLIP1-213ENST00000540338 KNCNA6PVL3 124 aa8.15□□□□□ -1.11
CLIP1-213ENST00000540338 DEFB104AQ8WTQ1 72 aa8.15□□□□□ -1.11
CLIP1-213ENST00000540338 COX11Q9Y6N1 276 aa8.15□□□□□ -1.11
CLIP1-213ENST00000540338 MRPL35Q9NZE8 188 aaKnown RBP8.14□□□□□ -1.11
CLIP1-213ENST00000540338 J3QKU1 62 aa8.14□□□□□ -1.11
CLIP1-213ENST00000540338 K7EMI3 77 aa8.14□□□□□ -1.11
CLIP1-213ENST00000540338 CD5LO43866 347 aa8.14□□□□□ -1.11
CLIP1-213ENST00000540338 ANKRD39Q53RE8 183 aa8.14□□□□□ -1.11
CLIP1-213ENST00000540338 A0A0J9YX75 114 aa8.14□□□□□ -1.11
CLIP1-213ENST00000540338 RNF151Q2KHN1 245 aa8.14□□□□□ -1.11
CLIP1-213ENST00000540338 RPL39LQ96EH5 51 aaKnown RBP8.14□□□□□ -1.11
CLIP1-213ENST00000540338 FABP2P12104 132 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 ZNF415Q09FC8 603 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 PRR9Q5T870 116 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 SDHAF1A6NFY7 115 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 C19orf54Q5BKX5 351 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 BVES-AS1Q5T3Y7 98 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 LGALS9O00182 355 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 NEGR1Q7Z3B1 354 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 TRPT1Q86TN4 253 aaKnown RBP8.13□□□□□ -1.11
CLIP1-213ENST00000540338 ADGRG4Q8IZF6 3080 aa8.13□□□□□ -1.11
CLIP1-213ENST00000540338 TMEM238LA0A1B0GVL6 79 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 A6NJY4 79 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 K7EQG2 157 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 ZNF580Q9UK33 172 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 A0A087WX48 190 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 LGALS3P17931 250 aaKnown RBP8.12□□□□□ -1.11
CLIP1-213ENST00000540338 KRTAP10-9P60411 292 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 KIR3DS1Q14943 382 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 BBC3Q96PG8 261 aaPredicted RBP8.12□□□□□ -1.11
CLIP1-213ENST00000540338 IGHV3-73A0A0B4J1V6 119 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 F8VRH5 84 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 INSP01308 110 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 VCX2Q9H322 139 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 TP53TG1Q9Y2A0 90 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 MYO9AB2RTY4 2548 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 POLQO75417 2590 aa8.12□□□□□ -1.11
CLIP1-213ENST00000540338 H3BUT2 72 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 CD300EQ496F6 205 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-213ENST00000540338 Q6ZQT7 251 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 UBE2V1Q13404 147 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 PSMG3-AS1Q96PY0 264 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 JMJD8Q96S16 334 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 ZNF702PQ9H963 129 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 IGHV4-4A0A075B6R2 117 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 FOSL1P15407 271 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 CMC4P56277 68 aaPredicted RBP8.11□□□□□ -1.11
CLIP1-213ENST00000540338 GAGE1Q13065 139 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 ZNF124Q15973 351 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 CBY1Q9Y3M2 126 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 SORL1Q92673 2214 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 SIVA1O15304 175 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 AMMECR1LQ6DCA0 310 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 ODF3Q96PU9 254 aa8.11□□□□□ -1.11
CLIP1-213ENST00000540338 TLN2Q9Y4G6 2542 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 SAP30O75446 220 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 RRN3P1Q2M238 152 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 PCP2Q8IVA1 136 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 Q8N1Y9 231 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 VPS25Q9BRG1 176 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 GAS8-AS1O95177 125 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 PF4P02776 101 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 HLA-DRB4P13762 266 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 ODF1Q14990 250 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 TMEM86BQ8N661 226 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 CHAC1Q9BUX1 264 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 HLA-DRB4X5D2U9 266 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 NOTCH2Q04721 2471 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 SOCS3O14543 225 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 NPSP0C0P6 89 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 SUMO4Q6EEV6 95 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 DCANP1Q8TF63 244 aa8.1□□□□□ -1.11
CLIP1-213ENST00000540338 NHP2Q9NX24 153 aaKnown RBP8.1□□□□□ -1.11
CLIP1-213ENST00000540338 SONP18583 2426 aaKnown RBP8.1□□□□□ -1.11
CLIP1-213ENST00000540338 ZNF815PA8K554 130 aa8.09□□□□□ -1.11
CLIP1-213ENST00000540338 TMEM141Q96I45 108 aa8.09□□□□□ -1.11
CLIP1-213ENST00000540338 C4orf3Q8WVX3 66 aa8.09□□□□□ -1.11
CLIP1-213ENST00000540338 PRRC2AP48634 2157 aaKnown RBP8.09□□□□□ -1.11
CLIP1-213ENST00000540338 XCL2Q9UBD3 114 aa8.09□□□□□ -1.11
CLIP1-213ENST00000540338 A8MWV9 139 aa8.09□□□□□ -1.12
CLIP1-213ENST00000540338 NSUN5P1Q3KNT7 163 aa8.09□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms