RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 LINC00467Q9BRT7 94 aa9.29□□□□□ -0.92
CCDC42-202ENST00000539522 TMEM208Q9BTX3 173 aa9.29□□□□□ -0.92
CCDC42-202ENST00000539522 TMSB15BA0A087X1C1 80 aa9.28□□□□□ -0.92
CCDC42-202ENST00000539522 SMIM9A6NGZ8 99 aa9.28□□□□□ -0.92
CCDC42-202ENST00000539522 F2Z2F3 143 aa9.28□□□□□ -0.92
CCDC42-202ENST00000539522 GZMBP10144 247 aa9.28□□□□□ -0.92
CCDC42-202ENST00000539522 RPS10P46783 165 aaKnown RBP9.28□□□□□ -0.92
CCDC42-202ENST00000539522 RASL11AQ6T310 242 aa9.28□□□□□ -0.92
CCDC42-202ENST00000539522 FAM159AQ6UWV7 190 aa9.28□□□□□ -0.92
CCDC42-202ENST00000539522 IL17DQ8TAD2 202 aa9.28□□□□□ -0.92
CCDC42-202ENST00000539522 PGLYRP4Q96LB8 373 aa9.28□□□□□ -0.92
CCDC42-202ENST00000539522 RIGQ13278 110 aa9.27□□□□□ -0.93
CCDC42-202ENST00000539522 ANXA2RQ3ZCQ2 193 aa9.27□□□□□ -0.93
CCDC42-202ENST00000539522 MUC21Q5SSG8 566 aa9.27□□□□□ -0.93
CCDC42-202ENST00000539522 DNLZQ5SXM8 178 aa9.27□□□□□ -0.93
CCDC42-202ENST00000539522 WDR73Q6P4I2 378 aa9.27□□□□□ -0.93
CCDC42-202ENST00000539522 ATP5L2Q7Z4Y8 100 aa9.27□□□□□ -0.93
CCDC42-202ENST00000539522 BORCS7Q96B45 105 aa9.27□□□□□ -0.93
CCDC42-202ENST00000539522 LYSTQ99698 3801 aa9.27□□□□□ -0.93
CCDC42-202ENST00000539522 IGHV1OR15-1A0A075B7D0 117 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 A0A1B0GUT8 65 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 A0A1B0GW15 77 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 GRIFINA4D1Z8 144 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 SPINK4O60575 86 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 IGLC6P0CF74 106 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 HTN1P15515 57 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 RRN3P1Q2M238 152 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 TDRG1Q3Y452 100 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 LYZL1Q6UWQ5 148 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 FER1L6-AS1Q8NA97 138 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 NAGKQ9UJ70 344 aa9.26□□□□□ -0.93
CCDC42-202ENST00000539522 GNRH2O43555 120 aa9.25□□□□□ -0.93
CCDC42-202ENST00000539522 S100A8P05109 93 aa9.25□□□□□ -0.93
CCDC42-202ENST00000539522 NANOS2P60321 138 aaKnown RBP9.25□□□□□ -0.93
CCDC42-202ENST00000539522 C12orf74Q32Q52 190 aa9.25□□□□□ -0.93
CCDC42-202ENST00000539522 WWC2-AS2Q96NR7 200 aa9.25□□□□□ -0.93
CCDC42-202ENST00000539522 SSBP4Q9BWG4 385 aaPredicted RBP9.25□□□□□ -0.93
CCDC42-202ENST00000539522 GNB1LQ9BYB4 327 aa9.25□□□□□ -0.93
CCDC42-202ENST00000539522 MDFICQ9P1T7 246 aa9.25□□□□□ -0.93
CCDC42-202ENST00000539522 DKK2Q9UBU2 259 aa9.25□□□□□ -0.93
CCDC42-202ENST00000539522 CBY3A6NI87 242 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 C1orf196B1AJZ1 125 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 OR5AL1P0C617 328 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 MED14OSP0DP75 135 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 S100A4P26447 101 aaKnown RBP9.24□□□□□ -0.93
CCDC42-202ENST00000539522 ASIPP42127 132 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 EMP1P54849 157 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 FAM222AQ5U5X8 452 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 MRPL54Q6P161 138 aaKnown RBP9.24□□□□□ -0.93
CCDC42-202ENST00000539522 TMEM263Q8WUH6 116 aaKnown RBP9.24□□□□□ -0.93
CCDC42-202ENST00000539522 TPPP3Q9BW30 176 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 TRAPPC1Q9Y5R8 145 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 TENM2Q9NT68 2774 aa9.24□□□□□ -0.93
CCDC42-202ENST00000539522 MUC4Q99102 2169 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 KMT2CQ8NEZ4 4911 aaKnown RBP9.23□□□□□ -0.93
CCDC42-202ENST00000539522 DNAH1Q9P2D7 4330 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 A0A1B0GXF2 115 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 MT-ND6P03923 174 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 CTRLP40313 264 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 CACNG7P62955 275 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 HBBP68871 147 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 ZNF493Q6ZR52 646 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 LINC00612Q8N6U2 182 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 C16orf74Q96GX8 76 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 GSN-AS1Q9NRJ2 163 aa9.23□□□□□ -0.93
CCDC42-202ENST00000539522 SACSQ9NZJ4 4579 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 TRGV11A0A075B6L2 103 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 IGHV4-4A0A075B6R2 117 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 IGHV3-16A0A0C4DH30 117 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 SNAI2O43623 268 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 TRGC2P03986 189 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 ARMS2P0C7Q2 107 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 CAMPP49913 170 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 RAB4BP61018 213 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 CNFNQ9BYD5 112 aa9.22□□□□□ -0.93
CCDC42-202ENST00000539522 HLA-DQA1P01909 254 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 NTF3P20783 257 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 FABP9Q0Z7S8 132 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 TWIST1Q15672 202 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 TMEM136Q6ZRR5 245 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 Q6ZTC4 211 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 C11orf45Q8TAV5 145 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 NOP10Q9NPE3 64 aaKnown RBP9.21□□□□□ -0.94
CCDC42-202ENST00000539522 SCRT2Q9NQ03 307 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 VPS13DQ5THJ4 4388 aa9.21□□□□□ -0.94
CCDC42-202ENST00000539522 SNURFLB1AK76 121 aa9.2□□□□□ -0.94
CCDC42-202ENST00000539522 RNASE3P12724 160 aaKnown RBP9.2□□□□□ -0.94
CCDC42-202ENST00000539522 RAB5BP61020 215 aa9.2□□□□□ -0.94
CCDC42-202ENST00000539522 ZNF415Q09FC8 603 aa9.2□□□□□ -0.94
CCDC42-202ENST00000539522 DAZ2Q13117 558 aaKnown RBP9.2□□□□□ -0.94
CCDC42-202ENST00000539522 Q6ZTI0 123 aa9.2□□□□□ -0.94
CCDC42-202ENST00000539522 GATD1Q8NB37 220 aa9.2□□□□□ -0.94
CCDC42-202ENST00000539522 MUC7Q8TAX7 377 aa9.2□□□□□ -0.94
CCDC42-202ENST00000539522 MRPL18Q9H0U6 180 aaKnown RBP9.2□□□□□ -0.94
CCDC42-202ENST00000539522 PHLDA3Q9Y5J5 127 aa9.2□□□□□ -0.94
CCDC42-202ENST00000539522 NACAE9PAV3 2078 aa9.19□□□□□ -0.94
CCDC42-202ENST00000539522 H3BVH4 76 aa9.19□□□□□ -0.94
CCDC42-202ENST00000539522 APCSP02743 223 aa9.19□□□□□ -0.94
CCDC42-202ENST00000539522 SPANXN1Q5VSR9 72 aa9.19□□□□□ -0.94
CCDC42-202ENST00000539522 FRZBQ92765 325 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms