RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TRAPPC1Q9Y5R8 145 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 A0A0B4J2C4 111 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 IGKV1-9A0A0C4DH69 117 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 A0A1W2PQL4 384 aaPredicted RBP1.85□□□□□ -2.11
CD44-235ENST00000532339 CYB5BO43169 146 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 DCTN3O75935 186 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 OR7C1O76099 320 aaPredicted RBP1.85□□□□□ -2.11
CD44-235ENST00000532339 LTAP01374 205 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 CTSGP08311 255 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 HRES1P13985 223 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 RCVRNP35243 200 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 RPL27AP46776 148 aaKnown RBP1.85□□□□□ -2.11
CD44-235ENST00000532339 EIF2B2P49770 351 aaKnown RBP1.85□□□□□ -2.11
CD44-235ENST00000532339 AP2S1P53680 142 aaPredicted RBP1.85□□□□□ -2.11
CD44-235ENST00000532339 CLDN12P56749 244 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 CDK10Q15131 360 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 KRTAP25-1Q3LHN0 102 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 CENPWQ5EE01 88 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 BCL2L15Q5TBC7 163 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 SPATA31B1PQ5VZV4 182 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 FOXI2Q6ZQN5 318 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 LINC00304Q8N9R0 145 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 OR5D18Q8NGL1 313 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 OR4K15Q8NH41 348 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 STOML3Q8TAV4 291 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 SPACA4Q8TDM5 124 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 NEK7Q8TDX7 302 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 GALMQ96C23 342 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 ABHD14BQ96IU4 210 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 DCUN1D5Q9BTE7 237 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 MROQ9BYG7 248 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 TAS2R1Q9NYW7 299 aa1.85□□□□□ -2.11
CD44-235ENST00000532339 A6NED7 52 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 E7EUB6 86 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 ATP6V1G2O95670 118 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 OCM2P0CE71 109 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 CD36P16671 472 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 ALOX5APP20292 161 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 SRIP30626 198 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 POLR2JP52435 117 aaKnown RBP1.84□□□□□ -2.11
CD44-235ENST00000532339 COTL1Q14019 142 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 SS18Q15532 418 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 RTL8BQ17RB0 113 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 PIGYQ3MUY2 71 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 Q56UQ5 140 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 TOMM20LQ6UXN7 152 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 Q6ZQT7 251 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 FER1L6-AS1Q8NA97 138 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 TMEM263Q8WUH6 116 aaKnown RBP1.84□□□□□ -2.11
CD44-235ENST00000532339 PRO0255Q9UI72 69 aa1.84□□□□□ -2.11
CD44-235ENST00000532339 HMCN1Q96RW7 5635 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 IGHV3-30P01768 117 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 IGHV3-33P01772 117 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 BPGMP07738 259 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 SAA1P0DJI8 122 aaPredicted RBP1.83□□□□□ -2.12
CD44-235ENST00000532339 IGHV3-30-3P0DP02 117 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 IGHV3-30-5P0DP03 117 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 IDO1P14902 403 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 NPPCP23582 126 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 UBE2D1P51668 147 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 RPL19P84098 196 aaKnown RBP1.83□□□□□ -2.12
CD44-235ENST00000532339 ZNF846Q147U1 533 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 MPV17LQ2QL34 196 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 AMMECR1LQ6DCA0 310 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 EBLN2Q6P2I7 272 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 PXT1Q8NFP0 134 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 BPIFB6Q8NFQ5 453 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 DYDC1Q8WWB3 177 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 SMIM12Q96EX1 92 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 OR52B2Q96RD2 323 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 RETNLBQ9BQ08 111 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 DOK5Q9P104 306 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 OR52A1Q9UKL2 312 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 R4GMQ9 66 aa1.83□□□□□ -2.12
CD44-235ENST00000532339 TRGV2A0A075B6R0 118 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 IGKV1D-37A0A075B6S9 117 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 DAPL1A0PJW8 107 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 METTL15A6NJ78 407 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 MCRIP1C9JLW8 97 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 HTN1P15515 57 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 GADD45AP24522 165 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 CRYBA4P53673 196 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 DEFB1P60022 68 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 LGALSLQ3ZCW2 172 aaPredicted RBP1.82□□□□□ -2.12
CD44-235ENST00000532339 FAM78BQ5VT40 261 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 NIT1Q86X76 327 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.82□□□□□ -2.12
CD44-235ENST00000532339 OR10K1Q8NGX5 313 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 VSTM2AQ8TAG5 236 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 ARL6Q9H0F7 186 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 DUSP21Q9H596 190 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 PLEKHJ1Q9NW61 149 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 ABRACLQ9P1F3 81 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 PHLDA3Q9Y5J5 127 aa1.82□□□□□ -2.12
CD44-235ENST00000532339 TRBV24-1A0A075B6N3 115 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 LOC107986453A0A1B0GWG9 222 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 A0A1W2PNN7 141 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 A8MTW9 85 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 GGTLC3B5MD39 225 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms