RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 IFITM1P13164 125 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 H2BFSP57053 126 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 B3GALT5-AS1P59052 145 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 SPTBN1Q01082 2364 aaKnown RBP6.88□□□□□ -1.31
VCAN-208ENST00000512590 SDK2Q58EX2 2172 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 IGKV3D-7A0A0C4DH55 119 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 CHCHD10Q8WYQ3 142 aaPredicted RBP6.88□□□□□ -1.31
VCAN-208ENST00000512590 A0A087WV48 116 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 TAF1LQ8IZX4 1826 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 FAM231BA6NCW3 169 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 FAM231DQ6ZW35 169 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 C5orf56Q8N8D9 126 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 RNF126Q9BV68 326 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 TMEM14CQ9P0S9 112 aa6.88□□□□□ -1.31
VCAN-208ENST00000512590 A6NDX4 124 aa6.87□□□□□ -1.31
VCAN-208ENST00000512590 PPDPFLQ8WWR9 84 aa6.87□□□□□ -1.31
VCAN-208ENST00000512590 LAMB2P55268 1798 aa6.87□□□□□ -1.31
VCAN-208ENST00000512590 REG3GQ6UW15 175 aa6.87□□□□□ -1.31
VCAN-208ENST00000512590 RALGAPA1Q6GYQ0 2036 aa6.87□□□□□ -1.31
VCAN-208ENST00000512590 MYO5AQ9Y4I1 1855 aaKnown RBP6.87□□□□□ -1.31
VCAN-208ENST00000512590 TMEM256-PLSCR3K7ERE1 68 aa6.87□□□□□ -1.31
VCAN-208ENST00000512590 NHLRC4P0CG21 123 aaPredicted RBP6.87□□□□□ -1.31
VCAN-208ENST00000512590 C17orf58Q2M2W7 97 aa6.86□□□□□ -1.31
VCAN-208ENST00000512590 C1orf137Q5JT78 98 aa6.86□□□□□ -1.31
VCAN-208ENST00000512590 KPRPQ5T749 579 aaPredicted RBP6.86□□□□□ -1.31
VCAN-208ENST00000512590 Q6ZVH6 145 aa6.86□□□□□ -1.31
VCAN-208ENST00000512590 PDE6GP18545 87 aa6.86□□□□□ -1.31
VCAN-208ENST00000512590 SMIM20Q8N5G0 67 aa6.86□□□□□ -1.31
VCAN-208ENST00000512590 TNS1Q9HBL0 1735 aaKnown RBP6.86□□□□□ -1.31
VCAN-208ENST00000512590 RBAKDNA6NC62 111 aa6.86□□□□□ -1.31
VCAN-208ENST00000512590 PNRC2Q9NPJ4 139 aaKnown RBP6.86□□□□□ -1.31
VCAN-208ENST00000512590 KAAG1Q9UBP8 84 aa6.86□□□□□ -1.31
VCAN-208ENST00000512590 TCF20Q9UGU0 1960 aaKnown RBP6.86□□□□□ -1.31
VCAN-208ENST00000512590 NMBP08949 121 aa6.86□□□□□ -1.31
VCAN-208ENST00000512590 MYO16Q9Y6X6 1858 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 F8VRH5 84 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 EDN2P20800 178 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 Q8N1Y9 231 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 STRCQ7RTU9 1775 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 OXLD1Q5BKU9 147 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 Q6YL49 198 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 K7EMT4 169 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 SPINK1P00995 79 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 LENEPQ9Y5L5 61 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 LIMD2Q9BT23 127 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 TDRD15B5MCY1 1934 aaKnown RBP6.85□□□□□ -1.31
VCAN-208ENST00000512590 IGKV2-28A0A075B6P5 120 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 IGKV2D-28P01615 120 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 LHFPL1Q86WI0 220 aa6.85□□□□□ -1.31
VCAN-208ENST00000512590 NTN5Q8WTR8 489 aaPredicted RBP6.85□□□□□ -1.31
VCAN-208ENST00000512590 TRBV6-6A0A0A6YYG2 114 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 H3BMG7 143 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 TDRG1Q3Y452 100 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 LINC00114Q6XXX2 140 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 SCN1AP35498 2009 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 C10orf25Q5T742 122 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 RNF185Q96GF1 192 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 AGPAT4-IT1Q9H0P7 198 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 MSRB1Q9NZV6 116 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 TRBV10-1A0A0K0K1A3 114 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 WIPF3A6NGB9 483 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 ETDBQ3ZM63 59 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 LINC01556Q5JQF7 62 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 MIR7-3HGQ8N6C7 128 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 LOC285556D6RIA3 1793 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 SMCHD1A6NHR9 2005 aa6.84□□□□□ -1.31
VCAN-208ENST00000512590 MIAQ16674 131 aa6.84□□□□□ -1.32
VCAN-208ENST00000512590 ATAD5Q96QE3 1844 aa6.84□□□□□ -1.32
VCAN-208ENST00000512590 CFC1BP0CG36 223 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 CFC1P0CG37 223 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 CHD3Q12873 2000 aaKnown RBP6.83□□□□□ -1.32
VCAN-208ENST00000512590 SPTBP11277 2137 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 IGHV7-81A0A0B4J1V7 117 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 TMEM14EPQ6UXP3 125 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 NCOR1P1Q9H4R4 102 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 MTCL1Q9Y4B5 1905 aaKnown RBP6.83□□□□□ -1.32
VCAN-208ENST00000512590 ARHGEF17Q96PE2 2063 aaPredicted RBP6.83□□□□□ -1.32
VCAN-208ENST00000512590 A0A0B4J2C4 111 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 KLHDC3Q9BQ90 382 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 MYO7BQ6PIF6 2116 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 MT-ATP8P03928 68 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 DAND5Q8N907 189 aa6.83□□□□□ -1.32
VCAN-208ENST00000512590 NPYP01303 97 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 Q6ZR03 302 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 DCANP1Q8TF63 244 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 SPANXCQ9NY87 97 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 SPTBN2O15020 2390 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 IGLV4-69A0A075B6H9 119 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 C17orf82Q86X59 251 aaPredicted RBP6.82□□□□□ -1.32
VCAN-208ENST00000512590 WFDC1Q9HC57 220 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 A4D1N5 150 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 ZFAND2AQ8N6M9 145 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 POLR2AP24928 1970 aaKnown RBP6.82□□□□□ -1.32
VCAN-208ENST00000512590 CHD5Q8TDI0 1954 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 RPL37AP8A6NKH3 93 aa6.82□□□□□ -1.32
VCAN-208ENST00000512590 TRBV6-1A0A0K0K1D8 114 aa6.81□□□□□ -1.32
VCAN-208ENST00000512590 LST1O00453 97 aa6.81□□□□□ -1.32
VCAN-208ENST00000512590 IGLC1P0CG04 106 aa6.81□□□□□ -1.32
VCAN-208ENST00000512590 WFDC13Q8IUB5 93 aa6.81□□□□□ -1.32
VCAN-208ENST00000512590 TRIOBPQ9H2D6 2365 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms