RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 CLLU1Q5K131 121 aa0.6□□□□□ -2.31
SMC4-225ENST00000497203 DYNLRB2Q8TF09 96 aa0.6□□□□□ -2.31
SMC4-225ENST00000497203 CPDO75976 1380 aa0.59□□□□□ -2.31
SMC4-225ENST00000497203 PLXNA2O75051 1894 aa0.59□□□□□ -2.31
SMC4-225ENST00000497203 CXorf51AA0A1B0GTR3 108 aa0.59□□□□□ -2.31
SMC4-225ENST00000497203 NCS1P62166 190 aa0.59□□□□□ -2.31
SMC4-225ENST00000497203 ATP11AUNQ6ZP68 121 aa0.59□□□□□ -2.31
SMC4-225ENST00000497203 NDUFA11Q86Y39 141 aa0.59□□□□□ -2.31
SMC4-225ENST00000497203 COA4Q9NYJ1 87 aa0.59□□□□□ -2.31
SMC4-225ENST00000497203 MUC5BQ9HC84 5762 aaPredicted RBP0.59□□□□□ -2.32
SMC4-225ENST00000497203 CACNA1EQ15878 2313 aa0.58□□□□□ -2.32
SMC4-225ENST00000497203 TRAV12-2A0A075B6T6 113 aa0.58□□□□□ -2.32
SMC4-225ENST00000497203 M0R2P5 195 aa0.58□□□□□ -2.32
SMC4-225ENST00000497203 LZICQ8WZA0 190 aa0.58□□□□□ -2.32
SMC4-225ENST00000497203 CDK5RAP2Q96SN8 1893 aa0.58□□□□□ -2.32
SMC4-225ENST00000497203 ABCA4P78363 2273 aa0.58□□□□□ -2.32
SMC4-225ENST00000497203 OVOS2A0A0J9YW53 1432 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 OVOS2Q6IE36 1432 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 MCRIP1C9JLW8 97 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 CCDC179H3BU77 68 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 J3QLW9 94 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 PRH1P02810 166 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 CKS1BP61024 79 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 TMEM141Q96I45 108 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 DSCR8Q96T75 97 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 GSKIPQ9P0R6 139 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 ERG28Q9UKR5 140 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 VIRMAQ69YN4 1812 aaKnown RBP0.57□□□□□ -2.32
SMC4-225ENST00000497203 ARHGEF10O15013 1369 aa0.57□□□□□ -2.32
SMC4-225ENST00000497203 MYH13Q9UKX3 1938 aa0.56□□□□□ -2.32
SMC4-225ENST00000497203 ABCA1O95477 2261 aa0.56□□□□□ -2.32
SMC4-225ENST00000497203 A0A096LNT2 108 aa0.56□□□□□ -2.32
SMC4-225ENST00000497203 PYYP10082 97 aa0.56□□□□□ -2.32
SMC4-225ENST00000497203 SMR3AQ99954 134 aa0.56□□□□□ -2.32
SMC4-225ENST00000497203 BET1LQ9NYM9 111 aa0.56□□□□□ -2.32
SMC4-225ENST00000497203 LSM2Q9Y333 95 aaKnown RBP0.56□□□□□ -2.32
SMC4-225ENST00000497203 USP24Q9UPU5 2620 aa0.56□□□□□ -2.32
SMC4-225ENST00000497203 RBBP6Q7Z6E9 1792 aaKnown RBP0.55□□□□□ -2.32
SMC4-225ENST00000497203 CASZ1Q86V15 1759 aa0.55□□□□□ -2.32
SMC4-225ENST00000497203 TRBV20-1A0A075B6N2 111 aa0.55□□□□□ -2.32
SMC4-225ENST00000497203 J3QR89 54 aa0.55□□□□□ -2.32
SMC4-225ENST00000497203 ARPC5O15511 151 aa0.55□□□□□ -2.32
SMC4-225ENST00000497203 HIST1H1AQ02539 215 aaPredicted RBP0.55□□□□□ -2.32
SMC4-225ENST00000497203 ALX1Q15699 326 aa0.55□□□□□ -2.32
SMC4-225ENST00000497203 TSKUQ8WUA8 353 aa0.55□□□□□ -2.32
SMC4-225ENST00000497203 SAR1AQ9NR31 198 aa0.55□□□□□ -2.32
SMC4-225ENST00000497203 DISP2A7MBM2 1401 aa0.55□□□□□ -2.32
SMC4-225ENST00000497203 MAP2P11137 1827 aaKnown RBP0.54□□□□□ -2.32
SMC4-225ENST00000497203 FRAS1Q86XX4 4008 aa0.54□□□□□ -2.32
SMC4-225ENST00000497203 TCRBV3S1A0A5B6 114 aa0.54□□□□□ -2.32
SMC4-225ENST00000497203 ZNF670-ZNF695F2Z2N8 137 aa0.54□□□□□ -2.32
SMC4-225ENST00000497203 MPC1LP0DKB6 136 aa0.54□□□□□ -2.32
SMC4-225ENST00000497203 SLC25A6P12236 298 aa0.54□□□□□ -2.32
SMC4-225ENST00000497203 ZNF142P52746 1687 aaPredicted RBP0.53□□□□□ -2.32
SMC4-225ENST00000497203 KIF13AQ9H1H9 1805 aa0.53□□□□□ -2.32
SMC4-225ENST00000497203 TANC1Q9C0D5 1861 aa0.53□□□□□ -2.32
SMC4-225ENST00000497203 KRTAP21-1Q3LI58 79 aa0.53□□□□□ -2.32
SMC4-225ENST00000497203 OR2T2Q6IF00 324 aa0.53□□□□□ -2.32
SMC4-225ENST00000497203 KIAA0100Q14667 2235 aaKnown RBP0.52□□□□□ -2.33
SMC4-225ENST00000497203 MED13LQ71F56 2210 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 M0R2Z0 102 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 NCR2O95944 276 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 TFF1P04155 84 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 TSPAN19P0C672 248 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 IGLC6P0CF74 106 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 CYP2G1PQ6ZSU1 146 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 MAFIPQ8WZ33 124 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 SMIM3Q9BZL3 60 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 SYNJ1O43426 1573 aa0.52□□□□□ -2.33
SMC4-225ENST00000497203 CEP152O94986 1710 aa0.51□□□□□ -2.33
SMC4-225ENST00000497203 TNCP24821 2201 aa0.51□□□□□ -2.33
SMC4-225ENST00000497203 ERCC6Q03468 1493 aa0.51□□□□□ -2.33
SMC4-225ENST00000497203 CTAGE3PQ8IX95 158 aa0.51□□□□□ -2.33
SMC4-225ENST00000497203 RBAKDNA6NC62 111 aa0.5□□□□□ -2.33
SMC4-225ENST00000497203 ELOF1P60002 83 aaKnown RBP0.5□□□□□ -2.33
SMC4-225ENST00000497203 VSTM2AQ8TAG5 236 aa0.5□□□□□ -2.33
SMC4-225ENST00000497203 ANP32BQ92688 251 aaKnown RBP0.5□□□□□ -2.33
SMC4-225ENST00000497203 IFI27L1Q96BM0 104 aa0.5□□□□□ -2.33
SMC4-225ENST00000497203 COPZ2Q9P299 210 aa0.5□□□□□ -2.33
SMC4-225ENST00000497203 MYH6P13533 1939 aa0.49□□□□□ -2.33
SMC4-225ENST00000497203 F2Z2F3 143 aa0.49□□□□□ -2.33
SMC4-225ENST00000497203 EMX2Q04743 252 aa0.49□□□□□ -2.33
SMC4-225ENST00000497203 PTPRMP28827 1452 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 MUC5ACP98088 5654 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 FAM236AA0A1B0GUQ0 79 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 FAM236BA0A1B0GV22 79 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 LOC105371267A0A1B0GV96 52 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 KRTAP2-3P0C7H8 128 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 LINC00694P0DN24 101 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 SSBP1Q04837 148 aaKnown RBP0.48□□□□□ -2.33
SMC4-225ENST00000497203 SPANXN1Q5VSR9 72 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 LINC01545Q5VT33 79 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 SPINK6Q6UWN8 80 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 KRTAP2-4Q9BYR9 128 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 KRTAP2-1Q9BYU5 128 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 NAV2Q8IVL1 2488 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 MEGF8Q7Z7M0 2845 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 PLXNA1Q9UIW2 1896 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 MYO7AQ13402 2215 aa0.48□□□□□ -2.33
SMC4-225ENST00000497203 FHAD1B1AJZ9 1412 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms