RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 ZNF876PQ49A33 203 aa10.35□□□□□ -0.75
BRCA1-223ENST00000494123 LINC00612Q8N6U2 182 aa10.35□□□□□ -0.75
BRCA1-223ENST00000494123 TPPP3Q9BW30 176 aa10.35□□□□□ -0.75
BRCA1-223ENST00000494123 OSTCQ9NRP0 149 aa10.35□□□□□ -0.75
BRCA1-223ENST00000494123 ATP5G1P05496 136 aa10.34□□□□□ -0.75
BRCA1-223ENST00000494123 MED14OSP0DP75 135 aa10.34□□□□□ -0.75
BRCA1-223ENST00000494123 PNRC1Q12796 327 aaPredicted RBP10.34□□□□□ -0.75
BRCA1-223ENST00000494123 ZNF575Q86XF7 245 aa10.34□□□□□ -0.75
BRCA1-223ENST00000494123 SYT8Q8NBV8 401 aa10.34□□□□□ -0.75
BRCA1-223ENST00000494123 SFRP2Q96HF1 295 aa10.34□□□□□ -0.75
BRCA1-223ENST00000494123 TRAV10A0A0B4J240 114 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 HTN3P15516 51 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 FER1L6-AS1Q8NA97 138 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 PHLDA1Q8WV24 401 aaPredicted RBP10.33□□□□□ -0.76
BRCA1-223ENST00000494123 RASL10AQ92737 203 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 SEC11CQ9BY50 192 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 DEFB131BA0A096LNP1 70 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 A8MWL6 223 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 CT83Q5H943 113 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 ZFAND6Q6FIF0 208 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 OR10G8Q8NGN5 311 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 SCRT2Q9NQ03 307 aa10.33□□□□□ -0.76
BRCA1-223ENST00000494123 MUC4Q99102 2169 aa10.32□□□□□ -0.76
BRCA1-223ENST00000494123 A0A1W2PPQ1 181 aa10.32□□□□□ -0.76
BRCA1-223ENST00000494123 M0R381 172 aa10.32□□□□□ -0.76
BRCA1-223ENST00000494123 OR5AL1P0C617 328 aa10.32□□□□□ -0.76
BRCA1-223ENST00000494123 ADCYAP1P18509 176 aa10.32□□□□□ -0.76
BRCA1-223ENST00000494123 ZFP82Q8N141 532 aa10.32□□□□□ -0.76
BRCA1-223ENST00000494123 PTH2Q96A98 100 aa10.32□□□□□ -0.76
BRCA1-223ENST00000494123 C18orf15Q96N68 181 aa10.32□□□□□ -0.76
BRCA1-223ENST00000494123 NUPR2A6NF83 97 aa10.31□□□□□ -0.76
BRCA1-223ENST00000494123 SNAI2O43623 268 aa10.31□□□□□ -0.76
BRCA1-223ENST00000494123 IGLC6P0CF74 106 aa10.31□□□□□ -0.76
BRCA1-223ENST00000494123 SPANXN1Q5VSR9 72 aa10.31□□□□□ -0.76
BRCA1-223ENST00000494123 OR10AG1Q8NH19 301 aa10.31□□□□□ -0.76
BRCA1-223ENST00000494123 NDUFAF3Q9BU61 184 aa10.31□□□□□ -0.76
BRCA1-223ENST00000494123 SSBP4Q9BWG4 385 aaPredicted RBP10.31□□□□□ -0.76
BRCA1-223ENST00000494123 MUC21A0A0G2JKD1 596 aa10.3□□□□□ -0.76
BRCA1-223ENST00000494123 MUC21A0A140T8X8 626 aa10.3□□□□□ -0.76
BRCA1-223ENST00000494123 F5H768 121 aa10.3□□□□□ -0.76
BRCA1-223ENST00000494123 IGHV3-53P01767 116 aa10.3□□□□□ -0.76
BRCA1-223ENST00000494123 SSTP61278 116 aa10.3□□□□□ -0.76
BRCA1-223ENST00000494123 DMRTA1Q5VZB9 504 aa10.3□□□□□ -0.76
BRCA1-223ENST00000494123 OR4C5Q8NGB2 326 aa10.3□□□□□ -0.76
BRCA1-223ENST00000494123 V9GYV3 84 aa10.3□□□□□ -0.76
BRCA1-223ENST00000494123 TRAV4A0A0B4J268 109 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 F2Z2F3 143 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 C3orf84H3BNL1 204 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 PIK3CD-AS1Q5SR53 167 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 CEMP1Q6PRD7 247 aaPredicted RBP10.29□□□□□ -0.76
BRCA1-223ENST00000494123 LYZL1Q6UWQ5 148 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 TSKUQ8WUA8 353 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 KLK5Q9Y337 293 aaPredicted RBP10.29□□□□□ -0.76
BRCA1-223ENST00000494123 A8MWV9 139 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 PPP1R2P9O14990 202 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 GFRA4Q9GZZ7 299 aa10.29□□□□□ -0.76
BRCA1-223ENST00000494123 RS1O15537 224 aa10.28□□□□□ -0.76
BRCA1-223ENST00000494123 MT-ND4LP03901 98 aa10.28□□□□□ -0.76
BRCA1-223ENST00000494123 CACNG7P62955 275 aa10.28□□□□□ -0.76
BRCA1-223ENST00000494123 NDUFA5Q16718 116 aa10.28□□□□□ -0.76
BRCA1-223ENST00000494123 GTSF1Q8WW33 167 aa10.28□□□□□ -0.76
BRCA1-223ENST00000494123 ZNF479Q96JC4 524 aa10.28□□□□□ -0.76
BRCA1-223ENST00000494123 TRGV4A0A0C4DH28 118 aa10.27□□□□□ -0.77
BRCA1-223ENST00000494123 NXPH4O95158 308 aa10.27□□□□□ -0.77
BRCA1-223ENST00000494123 CTRLP40313 264 aa10.27□□□□□ -0.77
BRCA1-223ENST00000494123 RNF212Q495C1 297 aa10.27□□□□□ -0.77
BRCA1-223ENST00000494123 CFAP126Q5VTH2 177 aa10.27□□□□□ -0.77
BRCA1-223ENST00000494123 SLC7A5P1Q8MH63 180 aa10.27□□□□□ -0.77
BRCA1-223ENST00000494123 BORCS7Q96B45 105 aa10.27□□□□□ -0.77
BRCA1-223ENST00000494123 PGLYRP4Q96LB8 373 aa10.27□□□□□ -0.77
BRCA1-223ENST00000494123 CARHSP1Q9Y2V2 147 aaKnown RBP10.27□□□□□ -0.77
BRCA1-223ENST00000494123 FAM231BA6NCW3 169 aa10.26□□□□□ -0.77
BRCA1-223ENST00000494123 HIGD1CA8MV81 97 aa10.26□□□□□ -0.77
BRCA1-223ENST00000494123 IGLL5B9A064 214 aa10.26□□□□□ -0.77
BRCA1-223ENST00000494123 HOXA5P20719 270 aa10.26□□□□□ -0.77
BRCA1-223ENST00000494123 C10orf91Q5T1B1 145 aa10.26□□□□□ -0.77
BRCA1-223ENST00000494123 POM121L12Q8N7R1 296 aa10.26□□□□□ -0.77
BRCA1-223ENST00000494123 ANAPC16Q96DE5 110 aa10.26□□□□□ -0.77
BRCA1-223ENST00000494123 IGHV3-73A0A0B4J1V6 119 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 CIDEAO60543 219 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 CASC10Q5T4H9 136 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 FAM74A4Q5TZK3 123 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 AP1S3Q96PC3 154 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 JPT2Q9H910 190 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 NAT8BQ9UHF3 227 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 NTF3P20783 257 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 FOXA3P55318 350 aaPredicted RBP10.25□□□□□ -0.77
BRCA1-223ENST00000494123 TWIST1Q15672 202 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 WDR73Q6P4I2 378 aa10.25□□□□□ -0.77
BRCA1-223ENST00000494123 DNAH7Q8WXX0 4024 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 NACAE9PAV3 2078 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 IGHV4-4A0A075B6R2 117 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 A0A087WWL8 130 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 SMIM27A0A1W2PRY6 76 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 RHODO00212 210 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 APOC3P02656 99 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 SMIM17P0DL12 118 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 SLAQ13239 276 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 FHL2Q14192 279 aa10.24□□□□□ -0.77
BRCA1-223ENST00000494123 TMEM88Q6PEY1 159 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms