RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 XIRP2A4UGR9 3374 aa2.17□□□□□ -2.06
VPS13A-212ENST00000493341 TRIOO75962 3097 aa2.17□□□□□ -2.06
VPS13A-212ENST00000493341 C5orf42Q9H799 3197 aa2.17□□□□□ -2.06
VPS13A-212ENST00000493341 DOCK10Q96BY6 2186 aa2.17□□□□□ -2.06
VPS13A-212ENST00000493341 IGLV1-51P01701 117 aa2.17□□□□□ -2.06
VPS13A-212ENST00000493341 COX4I1P13073 169 aa2.17□□□□□ -2.06
VPS13A-212ENST00000493341 FOXA3P55318 350 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-212ENST00000493341 RAB37Q96AX2 223 aa2.17□□□□□ -2.06
VPS13A-212ENST00000493341 GGACTQ9BVM4 153 aa2.17□□□□□ -2.06
VPS13A-212ENST00000493341 CEP192Q8TEP8 1941 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 DSPPQ9NZW4 1301 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 MDC1Q14676 2089 aaKnown RBP2.16□□□□□ -2.06
VPS13A-212ENST00000493341 MUC6Q6W4X9 2439 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 TCRBV4S1A1TA0A5B7 111 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 CCL16O15467 120 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 LYRM1O43325 122 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 TMEM244Q5VVB8 128 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 RPS19BP1Q86WX3 136 aaKnown RBP2.16□□□□□ -2.06
VPS13A-212ENST00000493341 LRRC18Q8N456 261 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 SMIM3Q9BZL3 60 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 TPRKBQ9Y3C4 175 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 SPAG17Q6Q759 2223 aa2.16□□□□□ -2.06
VPS13A-212ENST00000493341 MUC22E2RYF6 1773 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-212ENST00000493341 MUC3AQ02505 3323 aa2.15□□□□□ -2.06
VPS13A-212ENST00000493341 FAM92AA1XBS5 289 aa2.15□□□□□ -2.06
VPS13A-212ENST00000493341 HMGA1P17096 107 aaKnown RBP2.15□□□□□ -2.06
VPS13A-212ENST00000493341 RPL22P35268 128 aaKnown RBP2.15□□□□□ -2.06
VPS13A-212ENST00000493341 SRP9P49458 86 aaKnown RBP2.15□□□□□ -2.06
VPS13A-212ENST00000493341 KRTAP10-1P60331 282 aa2.15□□□□□ -2.06
VPS13A-212ENST00000493341 MRPS36P82909 103 aaKnown RBP2.15□□□□□ -2.06
VPS13A-212ENST00000493341 HIST1H1AQ02539 215 aaPredicted RBP2.15□□□□□ -2.06
VPS13A-212ENST00000493341 PDE6HQ13956 83 aa2.15□□□□□ -2.06
VPS13A-212ENST00000493341 MORN2Q502X0 79 aa2.15□□□□□ -2.06
VPS13A-212ENST00000493341 MORN4Q8NDC4 146 aa2.15□□□□□ -2.06
VPS13A-212ENST00000493341 MUCL1Q96DR8 90 aa2.15□□□□□ -2.06
VPS13A-212ENST00000493341 ZDBF2Q9HCK1 2354 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 POLEQ07864 2286 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 MYOFQ9NZM1 2061 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 hDV103S1A0JD37 113 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 CD2P06729 351 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 GPX1P07203 203 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 MAXP61244 160 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 Q6ZRN7 208 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-212ENST00000493341 TSTD1Q8NFU3 115 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 OR8J3Q8NGG0 315 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 OR5A2Q8NGI9 324 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 NAT14Q8WUY8 206 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 OR4C12Q96R67 309 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 PFDN5Q99471 154 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 FKBP11Q9NYL4 201 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 MED12LQ86YW9 2145 aa2.15□□□□□ -2.07
VPS13A-212ENST00000493341 TCRAP04437 139 aa2.14□□□□□ -2.07
VPS13A-212ENST00000493341 TPT1P13693 172 aaKnown RBP2.14□□□□□ -2.07
VPS13A-212ENST00000493341 TMEM14EPQ6UXP3 125 aa2.14□□□□□ -2.07
VPS13A-212ENST00000493341 PIEZO1Q92508 2521 aa2.14□□□□□ -2.07
VPS13A-212ENST00000493341 CACNA1HO95180 2353 aa2.14□□□□□ -2.07
VPS13A-212ENST00000493341 ZNF292O60281 2723 aa2.14□□□□□ -2.07
VPS13A-212ENST00000493341 VCANP13611 3396 aa2.14□□□□□ -2.07
VPS13A-212ENST00000493341 PCDH15Q96QU1 1955 aa2.14□□□□□ -2.07
VPS13A-212ENST00000493341 MPC1LP0DKB6 136 aa2.13□□□□□ -2.07
VPS13A-212ENST00000493341 DSCR4P56555 118 aaPredicted RBP2.13□□□□□ -2.07
VPS13A-212ENST00000493341 HSD17B12Q53GQ0 312 aa2.13□□□□□ -2.07
VPS13A-212ENST00000493341 CLEC2BQ92478 149 aa2.13□□□□□ -2.07
VPS13A-212ENST00000493341 OTOGLQ3ZCN5 2332 aa2.13□□□□□ -2.07
VPS13A-212ENST00000493341 F5P12259 2224 aa2.13□□□□□ -2.07
VPS13A-212ENST00000493341 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.13□□□□□ -2.07
VPS13A-212ENST00000493341 TRBV6-5A0A0K0K1A5 114 aa2.13□□□□□ -2.07
VPS13A-212ENST00000493341 E7EUB6 86 aa2.13□□□□□ -2.07
VPS13A-212ENST00000493341 CIRBPQ14011 172 aaKnown RBP2.13□□□□□ -2.07
VPS13A-212ENST00000493341 U3KQ87 197 aa2.13□□□□□ -2.07
VPS13A-212ENST00000493341 MYO18AQ92614 2054 aaKnown RBP2.13□□□□□ -2.07
VPS13A-212ENST00000493341 PCNX2A6NKB5 2137 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 TRAV10A0A0B4J240 114 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 CCDC160A6NGH7 325 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 F8W036 122 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 M0R2Z0 102 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 HCRTO43612 131 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 C2orf82Q6UX34 121 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 TP53RKQ96S44 253 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 BANF2Q9H503 90 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 FAM186AA6NE01 2351 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 ZFC3H1O60293 1989 aaKnown RBP2.12□□□□□ -2.07
VPS13A-212ENST00000493341 CACNA1AO00555 2505 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 COL5A1P20908 1838 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-212ENST00000493341 C10orf142B7Z368 130 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 ERC2-IT1O76042 136 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 REG4Q9BYZ8 158 aa2.12□□□□□ -2.07
VPS13A-212ENST00000493341 PI4KAP42356 2102 aa2.11□□□□□ -2.07
VPS13A-212ENST00000493341 PLXNA2O75051 1894 aa2.11□□□□□ -2.07
VPS13A-212ENST00000493341 TRBV6-8A0A0A6YYG3 113 aa2.11□□□□□ -2.07
VPS13A-212ENST00000493341 SLC25A5P05141 298 aaKnown RBP2.11□□□□□ -2.07
VPS13A-212ENST00000493341 ZNF93P35789 620 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-212ENST00000493341 C1orf137Q5JT78 98 aa2.11□□□□□ -2.07
VPS13A-212ENST00000493341 TEX261Q6UWH6 196 aa2.11□□□□□ -2.07
VPS13A-212ENST00000493341 VPS25Q9BRG1 176 aa2.11□□□□□ -2.07
VPS13A-212ENST00000493341 WDFY4Q6ZS81 3184 aa2.11□□□□□ -2.07
VPS13A-212ENST00000493341 GVINP1Q7Z2Y8 2422 aa2.11□□□□□ -2.07
VPS13A-212ENST00000493341 TRAV27A0A087WT01 109 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 C9orf170A2RU37 121 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 UQCRQO14949 82 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms