RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 SCRT2Q9NQ03 307 aa11.68□□□□□ -0.54
SYNE1-227ENST00000489156 RBMY1BA6NDE4 496 aaKnown RBP11.67□□□□□ -0.54
SYNE1-227ENST00000489156 RBMY1EA6NEQ0 496 aaKnown RBP11.67□□□□□ -0.54
SYNE1-227ENST00000489156 H3BVH4 76 aa11.67□□□□□ -0.54
SYNE1-227ENST00000489156 CRXO43186 299 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-227ENST00000489156 RBMY1DP0C7P1 496 aaKnown RBP11.67□□□□□ -0.54
SYNE1-227ENST00000489156 C20orf144Q9BQM9 153 aa11.67□□□□□ -0.54
SYNE1-227ENST00000489156 ALKBH7Q9BT30 221 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-227ENST00000489156 WFDC10AQ9H1F0 79 aa11.67□□□□□ -0.54
SYNE1-227ENST00000489156 DNAH3Q8TD57 4116 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 MUC21A0A0G2JKD1 596 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 MUC21A0A140T8X8 626 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 GNRH2O43555 120 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 NUTF2P61970 127 aaKnown RBP11.66□□□□□ -0.54
SYNE1-227ENST00000489156 DMRTA1Q5VZB9 504 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 FAM104BQ5XKR9 115 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 TRPT1Q86TN4 253 aaKnown RBP11.66□□□□□ -0.54
SYNE1-227ENST00000489156 Q8N1Y9 231 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 HIST3H2BBQ8N257 126 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 OR10AG1Q8NH19 301 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 C19orf73Q9NVV2 129 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 IGHV1OR15-1A0A075B7D0 117 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 RNASE3P12724 160 aaKnown RBP11.66□□□□□ -0.54
SYNE1-227ENST00000489156 SPANXN1Q5VSR9 72 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 MSRB1Q9NZV6 116 aa11.66□□□□□ -0.54
SYNE1-227ENST00000489156 SSTP61278 116 aa11.65□□□□□ -0.54
SYNE1-227ENST00000489156 SMIM15Q7Z3B0 74 aa11.65□□□□□ -0.54
SYNE1-227ENST00000489156 PHLDA3Q9Y5J5 127 aa11.65□□□□□ -0.54
SYNE1-227ENST00000489156 S100A2P29034 98 aa11.64□□□□□ -0.55
SYNE1-227ENST00000489156 BAGE3Q86Y29 109 aa11.64□□□□□ -0.55
SYNE1-227ENST00000489156 DEFB125Q8N687 156 aa11.64□□□□□ -0.55
SYNE1-227ENST00000489156 C18orf32Q8TCD1 76 aa11.64□□□□□ -0.55
SYNE1-227ENST00000489156 ESDP10768 282 aa11.63□□□□□ -0.55
SYNE1-227ENST00000489156 FXYD7P58549 80 aa11.63□□□□□ -0.55
SYNE1-227ENST00000489156 AMN1Q8IY45 258 aa11.63□□□□□ -0.55
SYNE1-227ENST00000489156 LINC00467Q9BRT7 94 aa11.63□□□□□ -0.55
SYNE1-227ENST00000489156 TP53TG3Q9ULZ0 132 aa11.63□□□□□ -0.55
SYNE1-227ENST00000489156 TRGV11A0A075B6L2 103 aa11.62□□□□□ -0.55
SYNE1-227ENST00000489156 IGHV3-16A0A0C4DH30 117 aa11.62□□□□□ -0.55
SYNE1-227ENST00000489156 IFITM10A6NMD0 228 aa11.62□□□□□ -0.55
SYNE1-227ENST00000489156 NXPH4O95158 308 aa11.62□□□□□ -0.55
SYNE1-227ENST00000489156 INSP01308 110 aa11.62□□□□□ -0.55
SYNE1-227ENST00000489156 TMEM256Q8N2U0 113 aa11.62□□□□□ -0.55
SYNE1-227ENST00000489156 U3KQK5 164 aa11.62□□□□□ -0.55
SYNE1-227ENST00000489156 PPBPP02775 128 aa11.61□□□□□ -0.55
SYNE1-227ENST00000489156 RBMY1A1P0DJD3 496 aaKnown RBP11.61□□□□□ -0.55
SYNE1-227ENST00000489156 RBMY1CP0DJD4 496 aa11.61□□□□□ -0.55
SYNE1-227ENST00000489156 RBMY1FQ15415 496 aaKnown RBP11.61□□□□□ -0.55
SYNE1-227ENST00000489156 C9orf85Q96MD7 179 aa11.61□□□□□ -0.55
SYNE1-227ENST00000489156 SERF1AO75920 110 aa11.61□□□□□ -0.55
SYNE1-227ENST00000489156 RAB4AP20338 218 aa11.61□□□□□ -0.55
SYNE1-227ENST00000489156 AKR1D1P51857 326 aa11.61□□□□□ -0.55
SYNE1-227ENST00000489156 MRPL51Q4U2R6 128 aaKnown RBP11.61□□□□□ -0.55
SYNE1-227ENST00000489156 PDZD11Q5EBL8 140 aa11.61□□□□□ -0.55
SYNE1-227ENST00000489156 ORMDL3Q8N138 153 aa11.61□□□□□ -0.55
SYNE1-227ENST00000489156 TIMM8BQ9Y5J9 83 aaPredicted RBP11.61□□□□□ -0.55
SYNE1-227ENST00000489156 EVI2AP22794 236 aa11.6□□□□□ -0.55
SYNE1-227ENST00000489156 HIST1H2BLQ99880 126 aa11.6□□□□□ -0.55
SYNE1-227ENST00000489156 M0R381 172 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 LINC00310P59036 64 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 TMEM18Q96B42 140 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 RNF185Q96GF1 192 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 CBY3A6NI87 242 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 K7EIL1 84 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 IGHV4-30-4P0DP06 118 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 FABP4P15090 132 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 MORN3Q6PF18 240 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-227ENST00000489156 PACRGQ96M98 296 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-227ENST00000489156 MDFICQ9P1T7 246 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 LAMTOR2Q9Y2Q5 125 aa11.59□□□□□ -0.55
SYNE1-227ENST00000489156 D6R8Y8 96 aa11.58□□□□□ -0.56
SYNE1-227ENST00000489156 NUPR1O60356 82 aa11.58□□□□□ -0.56
SYNE1-227ENST00000489156 CKS2P33552 79 aa11.58□□□□□ -0.56
SYNE1-227ENST00000489156 AP1S3Q96PC3 154 aa11.58□□□□□ -0.56
SYNE1-227ENST00000489156 LINC01587Q99440 93 aa11.58□□□□□ -0.56
SYNE1-227ENST00000489156 C1QTNF4Q9BXJ3 329 aa11.58□□□□□ -0.56
SYNE1-227ENST00000489156 XCL2Q9UBD3 114 aa11.58□□□□□ -0.56
SYNE1-227ENST00000489156 SYT8Q8NBV8 401 aa11.57□□□□□ -0.56
SYNE1-227ENST00000489156 PRELID3AQ96N28 172 aa11.57□□□□□ -0.56
SYNE1-227ENST00000489156 RCHY1Q96PM5 261 aa11.57□□□□□ -0.56
SYNE1-227ENST00000489156 DPH3P1Q9H4G8 78 aa11.57□□□□□ -0.56
SYNE1-227ENST00000489156 MUC4Q99102 2169 aa11.57□□□□□ -0.56
SYNE1-227ENST00000489156 IQCJQ1A5X6 159 aa11.57□□□□□ -0.56
SYNE1-227ENST00000489156 RPL35AP18077 110 aaKnown RBP11.56□□□□□ -0.56
SYNE1-227ENST00000489156 CHCHD1Q96BP2 118 aaKnown RBP11.56□□□□□ -0.56
SYNE1-227ENST00000489156 DEFB121Q5J5C9 76 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 PIK3CD-AS1Q5SR53 167 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 NIT1Q86X76 327 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 MRAP2Q96G30 205 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 LINC00614P0C842 121 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 HTN1P15515 57 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 DEFA6Q01524 100 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 C1orf158Q8N1D5 194 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 OR10D4PQ8NGN7 298 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 PTH2Q96A98 100 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 TMEM208Q9BTX3 173 aa11.55□□□□□ -0.56
SYNE1-227ENST00000489156 SPRY2O43597 315 aa11.54□□□□□ -0.56
SYNE1-227ENST00000489156 GIG44P09565 113 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-227ENST00000489156 ZNF415Q09FC8 603 aa11.54□□□□□ -0.56
SYNE1-227ENST00000489156 C14orf178Q8N769 122 aaPredicted RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms