RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 A0A1B0GVG6 124 aa5.71□□□□□ -1.5
USP40-216ENST00000485943 TYMSP04818 313 aa5.71□□□□□ -1.5
USP40-216ENST00000485943 BCL2P10415 239 aa5.71□□□□□ -1.5
USP40-216ENST00000485943 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.71□□□□□ -1.5
USP40-216ENST00000485943 NHLRC2Q8NBF2 726 aa5.71□□□□□ -1.5
USP40-216ENST00000485943 PHLDA3Q9Y5J5 127 aa5.71□□□□□ -1.5
USP40-216ENST00000485943 HUWE1Q7Z6Z7 4374 aaKnown RBP5.7□□□□□ -1.5
USP40-216ENST00000485943 GNRH2O43555 120 aa5.7□□□□□ -1.5
USP40-216ENST00000485943 SMIM17P0DL12 118 aa5.7□□□□□ -1.5
USP40-216ENST00000485943 ZNF876PQ49A33 203 aa5.7□□□□□ -1.5
USP40-216ENST00000485943 SOHLH1Q5JUK2 328 aa5.7□□□□□ -1.5
USP40-216ENST00000485943 PRADC1Q9BSG0 188 aa5.7□□□□□ -1.5
USP40-216ENST00000485943 TPPP3Q9BW30 176 aa5.7□□□□□ -1.5
USP40-216ENST00000485943 ICOSQ9Y6W8 199 aa5.7□□□□□ -1.5
USP40-216ENST00000485943 TRAV1-1A0A0B4J248 108 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 TRAV4A0A0B4J268 109 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 H3BVH4 76 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 SPINK4O60575 86 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 SH2D1AO60880 128 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 SRIP30626 198 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 RPL35P42766 123 aaKnown RBP5.69□□□□□ -1.5
USP40-216ENST00000485943 SPANXN1Q5VSR9 72 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 MDFICQ9P1T7 246 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 PRO0255Q9UI72 69 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 APLNQ9ULZ1 77 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 HHLA3Q9XRX5 114 aa5.69□□□□□ -1.5
USP40-216ENST00000485943 IGHV3-73A0A0B4J1V6 119 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 IGHV3-16A0A0C4DH30 117 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 GRIFINA4D1Z8 144 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 RBFOX3A6NFN3 312 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 M0R381 172 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 CIDEAO60543 219 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 LTAP01374 205 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 P01737 135 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 SFTA3P0C7M3 94 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 RPS20P60866 119 aaKnown RBP5.68□□□□□ -1.5
USP40-216ENST00000485943 SSTP61278 116 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 MRPL23Q16540 153 aaKnown RBP5.68□□□□□ -1.5
USP40-216ENST00000485943 TDRG1Q3Y452 100 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 CENPWQ5EE01 88 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 FAM74A4Q5TZK3 123 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 POM121L12Q8N7R1 296 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 C11orf72Q8NBR9 251 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 BORCS7Q96B45 105 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 ZC2HC1AQ96GY0 325 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 KRTAP4-8Q9BYQ9 185 aa5.68□□□□□ -1.5
USP40-216ENST00000485943 A0A087WWL8 130 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 TRBV6-1A0A0K0K1D8 114 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 PLAC8L1A1L4L8 177 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 A8MWV9 139 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 IGLV2-11P01706 119 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 ZNF80P51504 273 aaPredicted RBP5.67□□□□□ -1.5
USP40-216ENST00000485943 CCL20P78556 96 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 KCNIP4Q6PIL6 250 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 Q6ZQT7 251 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 SMIM15Q7Z3B0 74 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 SH2D6Q7Z4S9 175 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 ZFP82Q8N141 532 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 TVP23CQ96ET8 276 aa5.67□□□□□ -1.5
USP40-216ENST00000485943 IGLV2-18A0A075B6J9 118 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 A0A096LPF7 62 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 F5H697 171 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 M0R2N4 97 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 RHODO00212 210 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 ARMS2P0C7Q2 107 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 PTTG1IPP53801 180 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 FAM3BP58499 235 aaPredicted RBP5.66□□□□□ -1.5
USP40-216ENST00000485943 PEA15Q15121 130 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 RHOHQ15669 191 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 RNF212Q495C1 297 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 NEGR1Q7Z3B1 354 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 OR2D3Q8NGH3 330 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 RASL10AQ92737 203 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 SMIM12Q96EX1 92 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 IL36BQ9NZH7 164 aa5.66□□□□□ -1.5
USP40-216ENST00000485943 TRAV9-2A0A087WT02 112 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 RAB19A4D1S5 217 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 ZNF727A8MUV8 499 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 H3BNG1 76 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 ZNF56Q15929 161 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 TTC32Q5I0X7 151 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 ZNF506Q5JVG8 444 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 C15orf54Q8N8G6 183 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 C11orf52Q96A22 123 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 ZNF479Q96JC4 524 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 C18orf15Q96N68 181 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 SMIM7Q9BQ49 75 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 DERL1Q9BUN8 251 aa5.65□□□□□ -1.5
USP40-216ENST00000485943 TRAV8-6A0A0B4J262 113 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 KRBOX1C9JBD0 128 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 TMEM250H0YL14 139 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 MGPP08493 103 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 HOXA5P20719 270 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 GCSHP23434 173 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 ERVFC1-1P60608 527 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 TEX261Q6UWH6 196 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 LINC00612Q8N6U2 182 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 FER1L6-AS1Q8NA97 138 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 AP1S3Q96PC3 154 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 PARLQ9H300 379 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms