RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 CITED2Q99967 270 aaPredicted RBP4.02□□□□□ -1.77
COL17A1-206ENST00000483876 B9D2Q9BPU9 175 aa4.02□□□□□ -1.77
COL17A1-206ENST00000483876 SCRT2Q9NQ03 307 aa4.02□□□□□ -1.77
COL17A1-206ENST00000483876 C11orf21Q9P2W6 132 aa4.02□□□□□ -1.77
COL17A1-206ENST00000483876 LAMTOR2Q9Y2Q5 125 aa4.02□□□□□ -1.77
COL17A1-206ENST00000483876 IGKV3-7A0A075B6H7 116 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 TMSB15BA0A087X1C1 80 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 GRIFINA4D1Z8 144 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 PRSS47A8MTI9 375 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 ADARB2-AS1A8MUL3 147 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 F6UB75 175 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 NUPR1O60356 82 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 SERF1AO75920 110 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 ZNF688P0C7X2 276 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 LINC00614P0C842 121 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 HLA-DRB4P13762 266 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 RNASE4P34096 147 aaKnown RBP4.01□□□□□ -1.77
COL17A1-206ENST00000483876 LINC00310P59036 64 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 TWIST1Q15672 202 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 KHDC1LQ5JSQ8 128 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 AMTNQ6UX39 209 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 SMIM15Q7Z3B0 74 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 NIT1Q86X76 327 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 TMEM61Q8N0U2 210 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 DYNLRB2Q8TF09 96 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 C12orf57Q99622 126 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 C20orf144Q9BQM9 153 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 LINC00467Q9BRT7 94 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 ZNF256Q9Y2P7 627 aaPredicted RBP4.01□□□□□ -1.77
COL17A1-206ENST00000483876 HLA-DRB4X5D2U9 266 aa4.01□□□□□ -1.77
COL17A1-206ENST00000483876 C7orf71A4D174 169 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 H3BMM0 161 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 PPP1R17O96001 155 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 NHLRC4P0CG21 123 aaPredicted RBP4□□□□□ -1.77
COL17A1-206ENST00000483876 ASIPP42127 132 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 TFPI2P48307 235 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 S100A12P80511 92 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 ANXA2RQ3ZCQ2 193 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 CD300EQ496F6 205 aaPredicted RBP4□□□□□ -1.77
COL17A1-206ENST00000483876 PYY3Q5JQD4 70 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 PRR9Q5T870 116 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 FAM159AQ6UWV7 190 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 ORMDL3Q8N138 153 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 POM121L12Q8N7R1 296 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 PTH2Q96A98 100 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 TPPP3Q9BW30 176 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 HERC1Q15751 4861 aa4□□□□□ -1.77
COL17A1-206ENST00000483876 DNAH9Q9NYC9 4486 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 LINC01546A6NGU7 62 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 HSBP1O75506 76 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 NXPH4O95158 308 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 IGLV1-51P01701 117 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 PRB4P10163 310 aaPredicted RBP3.99□□□□□ -1.77
COL17A1-206ENST00000483876 S100A4P26447 101 aaKnown RBP3.99□□□□□ -1.77
COL17A1-206ENST00000483876 CKS2P33552 79 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 INSL3P51460 131 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 DEFB131AP59861 70 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 DEFB1P60022 68 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 IQCJQ1A5X6 159 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 MRPL51Q4U2R6 128 aaKnown RBP3.99□□□□□ -1.77
COL17A1-206ENST00000483876 PDZD11Q5EBL8 140 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 PIK3CD-AS1Q5SR53 167 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 SPANXN1Q5VSR9 72 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 AMN1Q8IY45 258 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 MRAP2Q96G30 205 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 RNF185Q96GF1 192 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 PRELID3AQ96N28 172 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 DUX3Q96PT4 197 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 SAMD10Q9BYL1 202 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 MAP6D1Q9H9H5 199 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 MSRB1Q9NZV6 116 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 PHLDA3Q9Y5J5 127 aa3.99□□□□□ -1.77
COL17A1-206ENST00000483876 TRGV11A0A075B6L2 103 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 IGHV1OR15-1A0A075B7D0 117 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 TRAV12-3A0A0B4J271 114 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 IGHV3-16A0A0C4DH30 117 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 D6R8Y8 96 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 K7EMI3 77 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 CRXO43186 299 aaPredicted RBP3.98□□□□□ -1.77
COL17A1-206ENST00000483876 GNRH2O43555 120 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 RNASE3P12724 160 aaKnown RBP3.98□□□□□ -1.77
COL17A1-206ENST00000483876 CD33P20138 364 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 AMTP48728 403 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 NUTF2P61970 127 aaKnown RBP3.98□□□□□ -1.77
COL17A1-206ENST00000483876 ZFAND6Q6FIF0 208 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 Q6ZQT7 251 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 C11orf44Q8N8P7 122 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 OR10AG1Q8NH19 301 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 PRSS3P2Q8NHM4 247 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 URB1-AS1Q96HZ7 61 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 C9orf85Q96MD7 179 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 RCHY1Q96PM5 261 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 C20orf78Q9BR46 151 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 NDUFAF3Q9BU61 184 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 DPH3P1Q9H4G8 78 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 NXT2Q9NPJ8 142 aaKnown RBP3.98□□□□□ -1.77
COL17A1-206ENST00000483876 NIT2Q9NQR4 276 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 GSN-AS1Q9NRJ2 163 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 AP5S1Q9NUS5 200 aa3.98□□□□□ -1.77
COL17A1-206ENST00000483876 NAGKQ9UJ70 344 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms