RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 TTTY13Q9BZ97 58 aa13.68□□□□□ -0.22
CCM2-209ENST00000477605 TRBV12-3P01733 135 aa13.68□□□□□ -0.22
CCM2-209ENST00000477605 ANXA2RQ3ZCQ2 193 aa13.68□□□□□ -0.22
CCM2-209ENST00000477605 PHLDA1Q8WV24 401 aaPredicted RBP13.68□□□□□ -0.22
CCM2-209ENST00000477605 NAV2Q8IVL1 2488 aa13.67□□□□□ -0.22
CCM2-209ENST00000477605 NXPH4O95158 308 aa13.67□□□□□ -0.22
CCM2-209ENST00000477605 RPL32P62910 135 aaKnown RBP13.67□□□□□ -0.22
CCM2-209ENST00000477605 SPOCK3Q9BQ16 436 aa13.67□□□□□ -0.22
CCM2-209ENST00000477605 IGHV3OR16-10A0A075B7F0 116 aa13.67□□□□□ -0.22
CCM2-209ENST00000477605 NEXN-AS1Q8NBZ9 246 aa13.67□□□□□ -0.22
CCM2-209ENST00000477605 CHTOPQ9Y3Y2 248 aaKnown RBP13.67□□□□□ -0.22
CCM2-209ENST00000477605 MAST4O15021 2626 aa13.66□□□□□ -0.22
CCM2-209ENST00000477605 COTL1Q14019 142 aa13.66□□□□□ -0.22
CCM2-209ENST00000477605 TM4SF20Q53R12 229 aa13.66□□□□□ -0.22
CCM2-209ENST00000477605 BRD3OSQ6XYD6 125 aa13.66□□□□□ -0.22
CCM2-209ENST00000477605 NAA38Q9BRA0 125 aaKnown RBP13.66□□□□□ -0.22
CCM2-209ENST00000477605 C19orf84I3L1E1 186 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 K7EMT4 169 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 RNASE4P34096 147 aaKnown RBP13.65□□□□□ -0.22
CCM2-209ENST00000477605 MAPKAPK5-AS1Q8N8E1 139 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 UNC79Q9P2D8 2635 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 WNK2Q9Y3S1 2297 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 G3V4G9 280 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 IGLV1-40P01703 118 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 C14orf178Q8N769 122 aaPredicted RBP13.65□□□□□ -0.22
CCM2-209ENST00000477605 C10orf105Q8TEF2 133 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 RHPN1-AS1Q9BWJ2 59 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 ZNF580Q9UK33 172 aa13.65□□□□□ -0.22
CCM2-209ENST00000477605 IGHV4-61A0A0C4DH41 118 aa13.64□□□□□ -0.23
CCM2-209ENST00000477605 DAZ1Q9NQZ3 744 aaKnown RBP13.64□□□□□ -0.23
CCM2-209ENST00000477605 OR11H12B2RN74 326 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 J3KRW8 73 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 PF4V1P10720 104 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 RNASE3P12724 160 aaKnown RBP13.63□□□□□ -0.23
CCM2-209ENST00000477605 RPL11P62913 178 aaKnown RBP13.63□□□□□ -0.23
CCM2-209ENST00000477605 OR11H1Q8NG94 326 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 OR11H2Q8NH07 326 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 IGHV4OR15-8A0A075B7B6 117 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 A0A087WW49 117 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 E9PLD3 99 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 ID1P41134 155 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 C2orf66Q6UXQ4 117 aa13.63□□□□□ -0.23
CCM2-209ENST00000477605 NHP2Q9NX24 153 aaKnown RBP13.63□□□□□ -0.23
CCM2-209ENST00000477605 HRNRQ86YZ3 2850 aaPredicted RBP13.62□□□□□ -0.23
CCM2-209ENST00000477605 MYMXA0A1B0GTQ4 84 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 RNF223E7ERA6 249 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 H3BUX3 64 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 TACC2O95359 2948 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 DCHS2Q6V1P9 2916 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 KLLNB2CW77 178 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 SAP30O75446 220 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 IGHV4-38-2P0DP08 117 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 LY6EQ16553 131 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 RPL39LQ96EH5 51 aaKnown RBP13.62□□□□□ -0.23
CCM2-209ENST00000477605 KLK15Q9H2R5 256 aa13.62□□□□□ -0.23
CCM2-209ENST00000477605 LRBAP50851 2863 aa13.61□□□□□ -0.23
CCM2-209ENST00000477605 GNRH2O43555 120 aa13.61□□□□□ -0.23
CCM2-209ENST00000477605 IGHV3-11P01762 117 aa13.61□□□□□ -0.23
CCM2-209ENST00000477605 MGPP08493 103 aa13.61□□□□□ -0.23
CCM2-209ENST00000477605 BAALCQ8WXS3 180 aa13.61□□□□□ -0.23
CCM2-209ENST00000477605 HIST1H4GQ99525 98 aa13.61□□□□□ -0.23
CCM2-209ENST00000477605 KIF25-AS1Q9Y6Z4 181 aa13.61□□□□□ -0.23
CCM2-209ENST00000477605 CENPEQ02224 2701 aa13.61□□□□□ -0.23
CCM2-209ENST00000477605 IGLL5B9A064 214 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 CFHR3Q02985 330 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 C12orf74Q32Q52 190 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 CSTL1Q9H114 145 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 NOTCH2Q04721 2471 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 CRYBG3Q68DQ2 2970 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 TRBV7-3A0A075B6L6 115 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 A0A1B0GWB2 263 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 PAPPA-AS1Q5QFB9 102 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 CLEC2AQ6UVW9 174 aa13.6□□□□□ -0.23
CCM2-209ENST00000477605 K7ERJ3 54 aa13.59□□□□□ -0.23
CCM2-209ENST00000477605 CCL19Q99731 98 aa13.59□□□□□ -0.23
CCM2-209ENST00000477605 F6UB75 175 aa13.59□□□□□ -0.23
CCM2-209ENST00000477605 LINC00315P59091 139 aa13.59□□□□□ -0.23
CCM2-209ENST00000477605 FAM159AQ6UWV7 190 aa13.59□□□□□ -0.23
CCM2-209ENST00000477605 FOXI2Q6ZQN5 318 aa13.59□□□□□ -0.23
CCM2-209ENST00000477605 ODF3Q96PU9 254 aa13.59□□□□□ -0.23
CCM2-209ENST00000477605 CYSLTR1Q9Y271 337 aa13.59□□□□□ -0.23
CCM2-209ENST00000477605 CELSR2Q9HCU4 2923 aa13.58□□□□□ -0.24
CCM2-209ENST00000477605 PRSS29PA6NIE9 313 aa13.58□□□□□ -0.24
CCM2-209ENST00000477605 BLCAPP62952 87 aa13.58□□□□□ -0.24
CCM2-209ENST00000477605 MSMBP08118 114 aa13.57□□□□□ -0.24
CCM2-209ENST00000477605 DEFB1P60022 68 aa13.57□□□□□ -0.24
CCM2-209ENST00000477605 F8W1H4 67 aa13.57□□□□□ -0.24
CCM2-209ENST00000477605 ZNF479Q96JC4 524 aa13.57□□□□□ -0.24
CCM2-209ENST00000477605 ITPR2Q14571 2701 aa13.56□□□□□ -0.24
CCM2-209ENST00000477605 TMEM89A2RUT3 159 aa13.56□□□□□ -0.24
CCM2-209ENST00000477605 VCYO14598 125 aa13.56□□□□□ -0.24
CCM2-209ENST00000477605 POLR2KP53803 58 aaKnown RBP13.56□□□□□ -0.24
CCM2-209ENST00000477605 TMEM141Q96I45 108 aa13.56□□□□□ -0.24
CCM2-209ENST00000477605 SPRY2O43597 315 aa13.55□□□□□ -0.24
CCM2-209ENST00000477605 DCANP1Q8TF63 244 aa13.55□□□□□ -0.24
CCM2-209ENST00000477605 LGALS1P09382 135 aaKnown RBP13.55□□□□□ -0.24
CCM2-209ENST00000477605 GATA3P23771 443 aa13.55□□□□□ -0.24
CCM2-209ENST00000477605 TRBV6-5A0A0K0K1A5 114 aa13.54□□□□□ -0.24
CCM2-209ENST00000477605 RRN3P1Q2M238 152 aa13.54□□□□□ -0.24
CCM2-209ENST00000477605 PRADC1Q9BSG0 188 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms