RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 PHLDA3Q9Y5J5 127 aa4.28□□□□□ -1.72
SYNE1-219ENST00000469439 SVEP1Q4LDE5 3571 aa4.28□□□□□ -1.72
SYNE1-219ENST00000469439 TRBV20OR9-2A0A075B6H5 130 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 TRAV12-3A0A0B4J271 114 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 A0A1B0GUT8 65 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 KNCNA6PVL3 124 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 PRAC2D3DTV9 90 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 F6UB75 175 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 IGKV3-20P01619 116 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 NPSP0C0P6 89 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 MIFP14174 115 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 SPINK13Q1W4C9 94 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 KPRPQ5T749 579 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-219ENST00000469439 ZFP82Q8N141 532 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 DEFB125Q8N687 156 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 Q8TAT8 98 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 PTH2Q96A98 100 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 ZC2HC1AQ96GY0 325 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 SGK494Q96LW2 274 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 RCHY1Q96PM5 261 aa4.27□□□□□ -1.73
SYNE1-219ENST00000469439 NIPBLQ6KC79 2804 aaeCLIP4.27□□□□□ -1.73
SYNE1-219ENST00000469439 ATRQ13535 2644 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 TRBV24-1A0A075B6N3 115 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 SMIM27A0A1W2PRY6 76 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 HIGD1CA8MV81 97 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 H7C1H1 209 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 M0R2Z0 102 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 RHODO00212 210 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 ZNF324O75467 553 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-219ENST00000469439 IGLV2-8P01709 118 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 HLA-DQA1P01909 254 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 PPBPP02775 128 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 ZNF705DP0CH99 300 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-219ENST00000469439 ZNF705BP0CI00 300 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-219ENST00000469439 IGHV4-30-4P0DP06 118 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 ADCYAP1P18509 176 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 EDN2P20800 178 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 FAM3BP58499 235 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-219ENST00000469439 HBBP68871 147 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 SLAQ13239 276 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 LGALS9BQ3B8N2 356 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 GFI1BQ5VTD9 330 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 AMTNQ6UX39 209 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 FAM24BQ8N5W8 94 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 NHLRC2Q8NBF2 726 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 TMEM263Q8WUH6 116 aaKnown RBP4.26□□□□□ -1.73
SYNE1-219ENST00000469439 RNASE7Q9H1E1 156 aaKnown RBP4.26□□□□□ -1.73
SYNE1-219ENST00000469439 XCL2Q9UBD3 114 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 NAGKQ9UJ70 344 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 TIMM8BQ9Y5J9 83 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-219ENST00000469439 V9GYV3 84 aa4.26□□□□□ -1.73
SYNE1-219ENST00000469439 A8MWV9 139 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 J3KRW8 73 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 K7EN84 100 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 M0R2P5 195 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 TCAPO15273 167 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 SPRY2O43597 315 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 TNFRSF6BO95407 300 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 RPL35AP18077 110 aaKnown RBP4.25□□□□□ -1.73
SYNE1-219ENST00000469439 G0S2P27469 103 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 DEFB121Q5J5C9 76 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 GDF5OSQ5U4N7 250 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 AP1S3Q96PC3 154 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 GNB1LQ9BYB4 327 aa4.25□□□□□ -1.73
SYNE1-219ENST00000469439 SETD2Q9BYW2 2564 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-219ENST00000469439 IGHV4-4A0A075B6R2 117 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 IGHV3OR16-12A0A075B7B8 117 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 PGPEP1LA6NFU8 196 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 LYRM9A8MSI8 78 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 SNAI2O43623 268 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 TYMSP04818 313 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 HTN1P15515 57 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 CTRLP40313 264 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 TCL1AP56279 114 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 DAZ2Q13117 558 aaKnown RBP4.24□□□□□ -1.73
SYNE1-219ENST00000469439 BTN1A1Q13410 526 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 TWIST1Q15672 202 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 HIST2H2BDQ6DRA6 164 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 ZNF705AQ6ZN79 300 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-219ENST00000469439 RNF183Q96D59 192 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 FAM210BQ96KR6 192 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 TPPP3Q9BW30 176 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 CNFNQ9BYD5 112 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 LAMTOR2Q9Y2Q5 125 aa4.24□□□□□ -1.73
SYNE1-219ENST00000469439 TEP1Q99973 2627 aaKnown RBP4.23□□□□□ -1.73
SYNE1-219ENST00000469439 WNK1Q9H4A3 2382 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 TRAV12-2A0A075B6T6 113 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 LINC01549A6NIU2 74 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 G3V4G9 280 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 ARMS2P0C7Q2 107 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 SPART-AS1P0CW21 52 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 CRIP1P50238 77 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 RAB4BP61018 213 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 RAB5BP61020 215 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 ZNF876PQ49A33 203 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 MUC21Q5SSG8 566 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 LYZL1Q6UWQ5 148 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 NUP35Q8NFH5 326 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 OR11H2Q8NH07 326 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 PGLYRP4Q96LB8 373 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms