RNA–Protein interactions for RNA: ENST00000461383.1

VCL-203, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 268 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-203ENST00000461383 WDR97A6NE52 1622 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 CASZ1Q86V15 1759 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 NBDYA0A0U1RRE5 68 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 K7ERU9 68 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 ATP11AUNQ6ZP68 121 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 DEFB132Q7Z7B7 95 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 TSTD1Q8NFU3 115 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 SAR1AQ9NR31 198 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 LSM2Q9Y333 95 aaKnown RBP0.71□□□□□ -2.3
VCL-203ENST00000461383 UHRF1BP1LA0JNW5 1464 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 ZCCHC6Q5VYS8 1495 aaKnown RBP0.71□□□□□ -2.3
VCL-203ENST00000461383 ZNF462Q96JM2 2506 aa0.71□□□□□ -2.3
VCL-203ENST00000461383 SYNJ1O43426 1573 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 NOTCH1P46531 2555 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 TFF1P04155 84 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 IGLC6P0CF74 106 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 COX4I1P13073 169 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 SPATA8Q6RVD6 105 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 CTAGE3PQ8IX95 158 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 PPP1R1CQ8WVI7 109 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 MED13LQ71F56 2210 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 DISP2A7MBM2 1401 aa0.7□□□□□ -2.3
VCL-203ENST00000461383 MYH9P35579 1960 aaKnown RBP0.7□□□□□ -2.3
VCL-203ENST00000461383 KIAA0100Q14667 2235 aaKnown RBP0.69□□□□□ -2.3
VCL-203ENST00000461383 TRBV20-1A0A075B6N2 111 aa0.69□□□□□ -2.3
VCL-203ENST00000461383 TEX49A0A1B0GTD5 131 aa0.69□□□□□ -2.3
VCL-203ENST00000461383 M0R2P5 195 aa0.69□□□□□ -2.3
VCL-203ENST00000461383 LY6G6CO95867 125 aa0.69□□□□□ -2.3
VCL-203ENST00000461383 MPC1LP0DKB6 136 aa0.69□□□□□ -2.3
VCL-203ENST00000461383 SMIM21Q3B7S5 101 aa0.69□□□□□ -2.3
VCL-203ENST00000461383 TMEM141Q96I45 108 aa0.69□□□□□ -2.3
VCL-203ENST00000461383 COA4Q9NYJ1 87 aa0.69□□□□□ -2.3
VCL-203ENST00000461383 FAM236AA0A1B0GUQ0 79 aa0.68□□□□□ -2.3
VCL-203ENST00000461383 FAM236BA0A1B0GV22 79 aa0.68□□□□□ -2.3
VCL-203ENST00000461383 TCRBV3S1A0A5B6 114 aa0.68□□□□□ -2.3
VCL-203ENST00000461383 M0R129 80 aa0.68□□□□□ -2.3
VCL-203ENST00000461383 SLC25A6P12236 298 aa0.68□□□□□ -2.3
VCL-203ENST00000461383 KLKP1Q107X0 134 aa0.68□□□□□ -2.3
VCL-203ENST00000461383 PSMG3Q9BT73 122 aaPredicted RBP0.68□□□□□ -2.3
VCL-203ENST00000461383 ERG28Q9UKR5 140 aa0.68□□□□□ -2.3
VCL-203ENST00000461383 RBBP6Q7Z6E9 1792 aaKnown RBP0.68□□□□□ -2.3
VCL-203ENST00000461383 A0A0D9SG42 100 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 CXorf51AA0A1B0GTR3 108 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 ZNF670-ZNF695F2Z2N8 137 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 CCDC179H3BU77 68 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 LINC00694P0DN24 101 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 PFDN5Q99471 154 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 TPT1P8Q9HAU6 139 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 TMEM14BQ9NUH8 114 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 BET1LQ9NYM9 111 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 ERCC6Q03468 1493 aa0.67□□□□□ -2.3
VCL-203ENST00000461383 ASH1LQ9NR48 2969 aaKnown RBP0.66□□□□□ -2.3
VCL-203ENST00000461383 BLMP54132 1417 aaPredicted RBP0.66□□□□□ -2.3
VCL-203ENST00000461383 NCR2O95944 276 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 TSPAN19P0C672 248 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 CYP2G1PQ6ZSU1 146 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 NDUFA11Q86Y39 141 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 DSCR8Q96T75 97 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 C10orf95Q9H7T3 257 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 CPDO75976 1380 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 PARP14Q460N5 1801 aa0.66□□□□□ -2.3
VCL-203ENST00000461383 TRAV12-2A0A075B6T6 113 aa0.65□□□□□ -2.31
VCL-203ENST00000461383 SPINK7P58062 85 aa0.65□□□□□ -2.31
VCL-203ENST00000461383 COPZ1P61923 177 aa0.65□□□□□ -2.31
VCL-203ENST00000461383 RPL37P61927 97 aaKnown RBP0.65□□□□□ -2.31
VCL-203ENST00000461383 MIC13Q5XKP0 118 aa0.65□□□□□ -2.31
VCL-203ENST00000461383 RPL7L1Q6DKI1 246 aaKnown RBP0.65□□□□□ -2.31
VCL-203ENST00000461383 VSTM2AQ8TAG5 236 aa0.65□□□□□ -2.31
VCL-203ENST00000461383 IFI27L1Q96BM0 104 aa0.65□□□□□ -2.31
VCL-203ENST00000461383 A6NIN4 97 aa0.64□□□□□ -2.31
VCL-203ENST00000461383 PYYP10082 97 aa0.64□□□□□ -2.31
VCL-203ENST00000461383 RRAS2P62070 204 aaPredicted RBP0.64□□□□□ -2.31
VCL-203ENST00000461383 SPANXN1Q5VSR9 72 aa0.64□□□□□ -2.31
VCL-203ENST00000461383 LINC01545Q5VT33 79 aa0.64□□□□□ -2.31
VCL-203ENST00000461383 ZNF142P52746 1687 aaPredicted RBP0.64□□□□□ -2.31
VCL-203ENST00000461383 PLXNA1Q9UIW2 1896 aa0.64□□□□□ -2.31
VCL-203ENST00000461383 MAP2P11137 1827 aaKnown RBP0.64□□□□□ -2.31
VCL-203ENST00000461383 SPEF2Q9C093 1822 aa0.64□□□□□ -2.31
VCL-203ENST00000461383 DOCK11Q5JSL3 2073 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 F5P12259 2224 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 MYO7AQ13402 2215 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 ZNF469Q96JG9 3925 aaPredicted RBP0.63□□□□□ -2.31
VCL-203ENST00000461383 RBAKDNA6NC62 111 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 NPFFO15130 113 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 RPS25P62851 125 aaKnown RBP0.63□□□□□ -2.31
VCL-203ENST00000461383 SPCS2Q15005 226 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 CCDC58Q4VC31 144 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 OR2T2Q6IF00 324 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 TSKUQ8WUA8 353 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 TCEAL4Q96EI5 215 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 NDUFA12Q9UI09 145 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 PAIP2BQ9ULR5 123 aaKnown RBP0.63□□□□□ -2.31
VCL-203ENST00000461383 MYH7P12883 1935 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 SOGA1O94964 1423 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 PRG4Q92954 1404 aaPredicted RBP0.63□□□□□ -2.31
VCL-203ENST00000461383 TANC1Q9C0D5 1861 aa0.63□□□□□ -2.31
VCL-203ENST00000461383 AKAP11Q9UKA4 1901 aa0.62□□□□□ -2.31
VCL-203ENST00000461383 F2Z2F3 143 aa0.62□□□□□ -2.31
VCL-203ENST00000461383 IL5P05113 134 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms