RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 MTFP1Q9UDX5 166 aa3.74□□□□□ -1.81
USP49-205ENST00000448078 LRP1Q07954 4544 aaKnown RBP3.73□□□□□ -1.81
USP49-205ENST00000448078 A0A087WX48 190 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 FBLL1A6NHQ2 334 aaKnown RBP3.73□□□□□ -1.81
USP49-205ENST00000448078 KLLNB2CW77 178 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 M0R2P5 195 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 ZNF253O75346 499 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 SLC25A6P12236 298 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 CSN1S1P47710 185 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 AQP4P55087 323 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 SRSF9Q13242 221 aaKnown RBP eCLIP3.73□□□□□ -1.81
USP49-205ENST00000448078 RHOHQ15669 191 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 LYZL2Q7Z4W2 148 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 OR1L4Q8NGR5 311 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 DYNC2LI1Q8TCX1 351 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 AP3S1Q92572 193 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 GPR132Q9UNW8 380 aa3.73□□□□□ -1.81
USP49-205ENST00000448078 TRBV7-9A0A0J9YWB2 115 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 TRBV6-4A0A1B0GX49 114 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 FNDC10F2Z333 226 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 SNRPCP09234 159 aaKnown RBP3.72□□□□□ -1.81
USP49-205ENST00000448078 AKAIN1P0CW23 69 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 CRISP2P16562 243 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 NDUFV3P56181 108 aaKnown RBP3.72□□□□□ -1.81
USP49-205ENST00000448078 MRPS10P82664 201 aaKnown RBP3.72□□□□□ -1.81
USP49-205ENST00000448078 LRP2P98164 4655 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 BTN1A1Q13410 526 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 TMEM182Q6ZP80 229 aaPredicted RBP3.72□□□□□ -1.81
USP49-205ENST00000448078 LINC01600Q96MT4 127 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 PFDN5Q99471 154 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 AGPAT4-IT1Q9H0P7 198 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 PARLQ9H300 379 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 RABL2AQ9UBK7 228 aaPredicted RBP3.72□□□□□ -1.81
USP49-205ENST00000448078 RABL2BQ9UNT1 228 aa3.72□□□□□ -1.81
USP49-205ENST00000448078 LINC00854A0A1B0GVQ3 168 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 H3BTX0 84 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 ZNF138P52744 262 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 FGF8P55075 233 aaPredicted RBP3.71□□□□□ -1.82
USP49-205ENST00000448078 ERCC8Q13216 396 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 TMEM183BQ1AE95 376 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 LRRC37A5PQ49AS3 106 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 DPPA3Q6W0C5 159 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 CLVS1Q8IUQ0 354 aaPredicted RBP3.71□□□□□ -1.82
USP49-205ENST00000448078 TMEM183AQ8IXX5 376 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 RNF185Q96GF1 192 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 KCNS1Q96KK3 526 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 ALKBH7Q9BT30 221 aaPredicted RBP3.71□□□□□ -1.82
USP49-205ENST00000448078 GGACTQ9BVM4 153 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 C20orf85Q9H1P6 137 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 PSENENQ9NZ42 101 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 CCDC59Q9P031 241 aaKnown RBP3.71□□□□□ -1.82
USP49-205ENST00000448078 RAB26Q9ULW5 256 aa3.71□□□□□ -1.82
USP49-205ENST00000448078 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.7□□□□□ -1.82
USP49-205ENST00000448078 IGHV3-16A0A0C4DH30 117 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 TMEM262E9PQX1 116 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 K7EPK0 472 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 AGPAT2O15120 278 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 MRPS12O15235 138 aaKnown RBP3.7□□□□□ -1.82
USP49-205ENST00000448078 HPGDSO60760 199 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 CRPP02741 224 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 IGLC2P0DOY2 106 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 MGST1P10620 155 aaKnown RBP3.7□□□□□ -1.82
USP49-205ENST00000448078 UBE2MP61081 183 aaKnown RBP3.7□□□□□ -1.82
USP49-205ENST00000448078 RPL19P84098 196 aaKnown RBP3.7□□□□□ -1.82
USP49-205ENST00000448078 PDE6HQ13956 83 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 WFDC2Q14508 124 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 NEDD8Q15843 81 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 MUC21Q5SSG8 566 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 PATE2Q6UY27 113 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 DAZ4Q86SG3 579 aaKnown RBP3.7□□□□□ -1.82
USP49-205ENST00000448078 SLC25A29Q8N8R3 303 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.7□□□□□ -1.82
USP49-205ENST00000448078 UBE2WQ96B02 151 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 DAZ3Q9NR90 486 aaKnown RBP3.7□□□□□ -1.82
USP49-205ENST00000448078 MCUBQ9NWR8 336 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 ZNF492Q9P255 531 aa3.7□□□□□ -1.82
USP49-205ENST00000448078 TRBV19A0A075B6N1 114 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 A0A0J9YXV3 536 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 LOC100131303A0A0U1RQF7 123 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 C5orf51A6NDU8 294 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 PRSS46E5RG02 174 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 H3BQ15 152 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 CCNKO75909 580 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 FAUP35544 74 aaKnown RBP3.69□□□□□ -1.82
USP49-205ENST00000448078 HNRNPA3P51991 378 aaKnown RBP3.69□□□□□ -1.82
USP49-205ENST00000448078 PKIAP61925 76 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 RRAS2P62070 204 aaPredicted RBP3.69□□□□□ -1.82
USP49-205ENST00000448078 LSM3P62310 102 aaKnown RBP3.69□□□□□ -1.82
USP49-205ENST00000448078 ZNF266Q14584 549 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 TMEM128Q5BJH2 165 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 IZUMO2Q6UXV1 221 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 C9orf163Q8N9P6 203 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 RAB2BQ8WUD1 216 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 GTSF1Q8WW33 167 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 SMIM8Q96KF7 97 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 CHCHD7Q9BUK0 85 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 EXTL2Q9UBQ6 330 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 NAGKQ9UJ70 344 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 KLK12Q9UKR0 248 aa3.69□□□□□ -1.82
USP49-205ENST00000448078 PKHD1L1Q86WI1 4243 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms