RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TRBV10-2A0A0K0K1G8 114 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 Q71RC1 249 aaPredicted RBP7.62□□□□□ -1.19
USP54-205ENST00000424265 DYNLRB2Q8TF09 96 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 TMEM243Q9BU79 118 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 H3BUA1 57 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 LGALS3P17931 250 aaKnown RBP7.61□□□□□ -1.19
USP54-205ENST00000424265 PIFOQ8TCI5 191 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 ODF3Q96PU9 254 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 DYSFO75923 2080 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 ATRXP46100 2492 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 PLCE1Q9P212 2302 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 CD69Q07108 199 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 PEMTQ9UBM1 199 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 MRPS12O15235 138 aaKnown RBP7.61□□□□□ -1.19
USP54-205ENST00000424265 IGLV1-47P01700 117 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 TMEM14BQ9NUH8 114 aa7.61□□□□□ -1.19
USP54-205ENST00000424265 TRBV7-7A0A0K0K1E9 115 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 NDUFA11Q86Y39 141 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 MLST8Q9BVC4 326 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 LINC00643Q86TS7 51 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 TRBV7-1A0A0A6YYK4 115 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 MAPKAPK5-AS1Q8N8E1 139 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 FAM110DQ8TAY7 271 aaPredicted RBP7.6□□□□□ -1.19
USP54-205ENST00000424265 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.6□□□□□ -1.19
USP54-205ENST00000424265 KNCNA6PVL3 124 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 J3QQQ9 107 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 CRYGAP11844 174 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 ZNF134P52741 427 aa7.6□□□□□ -1.19
USP54-205ENST00000424265 TRBV7-3A0A075B6L6 115 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 SMKR1H3BMG3 65 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 APELAP0DMC3 54 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 NPBQ8NG41 125 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 C6orf226Q5I0X4 101 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 UBE2D3P61077 147 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 UBE2D2P62837 147 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 RUSC1-AS1Q66K80 236 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 EXOC3-AS1Q8N2X6 119 aa7.59□□□□□ -1.19
USP54-205ENST00000424265 WDR87Q6ZQQ6 2873 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 CFC1BP0CG36 223 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 CFC1P0CG37 223 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 FAM104BQ5XKR9 115 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 KLK15Q9H2R5 256 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 IGKV1-16P04430 117 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 ZFP36P26651 326 aaKnown RBP7.58□□□□□ -1.2
USP54-205ENST00000424265 SCGB3A1Q96QR1 104 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 AGPAT4-IT1Q9H0P7 198 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 MALRD1Q5VYJ5 2156 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 ODF3BA8MYP8 253 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 C16orf92Q96LL3 132 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 C9orf85Q96MD7 179 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 INS-IGF2F8WCM5 200 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 MRPL55Q7Z7F7 128 aaKnown RBP7.58□□□□□ -1.2
USP54-205ENST00000424265 NDUFA4L2Q9NRX3 87 aa7.58□□□□□ -1.2
USP54-205ENST00000424265 LINC01548A6NM66 108 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 LINC01619G3V211 115 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 PF4P02776 101 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 HOXA4Q00056 320 aaPredicted RBP7.57□□□□□ -1.2
USP54-205ENST00000424265 PRB3Q04118 309 aaPredicted RBP7.57□□□□□ -1.2
USP54-205ENST00000424265 Q8N7P7 452 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 PIEZO2Q9H5I5 2752 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 MRPL51Q4U2R6 128 aaKnown RBP7.57□□□□□ -1.2
USP54-205ENST00000424265 LINC00305Q7Z4B0 112 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 TRAV8-3A0A0A6YYJ7 113 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 IGHV4-31P0DP07 118 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 DSCAMO60469 2012 aa7.57□□□□□ -1.2
USP54-205ENST00000424265 A0A0B4J2C4 111 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 FAM240AA0A1B0GVK7 77 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 ELANEP08246 267 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 CMC4P56277 68 aaPredicted RBP7.56□□□□□ -1.2
USP54-205ENST00000424265 LAGE3Q14657 143 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 Q9H3A6 140 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 SHANK1Q9Y566 2161 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 TMEM89A2RUT3 159 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 LYZL1Q6UWQ5 148 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 MAPK1IP1LQ8NDC0 245 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 H3BT86 120 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 LINC00336Q6ZUF6 198 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 SBSPONQ8IVN8 264 aa7.56□□□□□ -1.2
USP54-205ENST00000424265 MYCNOSP40205 109 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 OTORQ9NRC9 128 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 IGHV3-21A0A0B4J1V1 117 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 RNASE2P10153 161 aaKnown RBP7.55□□□□□ -1.2
USP54-205ENST00000424265 DEFB112Q30KQ8 113 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 PSMG3-AS1Q96PY0 264 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 ZNRD1Q9P1U0 126 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 PKD1L2Q7Z442 2459 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 PRR20EP86478 221 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 PRR20CP86479 221 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 PRR20DP86480 221 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 PRR20BP86481 221 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 PRR20AP86496 221 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 CHD8Q9HCK8 2581 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 SERP2Q8N6R1 65 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 TRAV12-3A0A0B4J271 114 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 RBMY1BA6NDE4 496 aaKnown RBP7.55□□□□□ -1.2
USP54-205ENST00000424265 RBMY1EA6NEQ0 496 aaKnown RBP7.55□□□□□ -1.2
USP54-205ENST00000424265 TCRAP04437 139 aa7.55□□□□□ -1.2
USP54-205ENST00000424265 RBMY1DP0C7P1 496 aaKnown RBP7.55□□□□□ -1.2
USP54-205ENST00000424265 RBMY1A1P0DJD3 496 aaKnown RBP7.55□□□□□ -1.2
USP54-205ENST00000424265 RBMY1CP0DJD4 496 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms