RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SYT8Q8NBV8 401 aa12.47□□□□□ -0.41
CCDC28B-202ENST00000421922 FRZBQ92765 325 aa12.47□□□□□ -0.41
CCDC28B-202ENST00000421922 M0R381 172 aa12.46□□□□□ -0.41
CCDC28B-202ENST00000421922 ZFP82Q8N141 532 aa12.46□□□□□ -0.41
CCDC28B-202ENST00000421922 OR10AG1Q8NH19 301 aa12.46□□□□□ -0.41
CCDC28B-202ENST00000421922 TRAPPC1Q9Y5R8 145 aa12.46□□□□□ -0.41
CCDC28B-202ENST00000421922 HLA-DQA1P01909 254 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 RNASE3P12724 160 aaKnown RBP12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 NTF3P20783 257 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 RRN3P1Q2M238 152 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 SSBP4Q9BWG4 385 aaPredicted RBP12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 GNB1LQ9BYB4 327 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 TGP01266 2768 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 A0A1B0GXF2 115 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 TRGC1P0CF51 173 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 ZNF575Q86XF7 245 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 CSNK1G2-AS1Q8NCQ2 148 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 RCHY1Q96PM5 261 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 CNFNQ9BYD5 112 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 MDFICQ9P1T7 246 aa12.45□□□□□ -0.42
CCDC28B-202ENST00000421922 A8MZ25 164 aa12.44□□□□□ -0.42
CCDC28B-202ENST00000421922 C1orf196B1AJZ1 125 aa12.44□□□□□ -0.42
CCDC28B-202ENST00000421922 DEFB135Q30KP9 77 aa12.44□□□□□ -0.42
CCDC28B-202ENST00000421922 TMEM263Q8WUH6 116 aaKnown RBP12.44□□□□□ -0.42
CCDC28B-202ENST00000421922 C16orf74Q96GX8 76 aa12.44□□□□□ -0.42
CCDC28B-202ENST00000421922 C9orf85Q96MD7 179 aa12.44□□□□□ -0.42
CCDC28B-202ENST00000421922 ZNF705AQ6ZN79 300 aaPredicted RBP12.43□□□□□ -0.42
CCDC28B-202ENST00000421922 ZNF493Q6ZR52 646 aa12.43□□□□□ -0.42
CCDC28B-202ENST00000421922 TMEM136Q6ZRR5 245 aa12.43□□□□□ -0.42
CCDC28B-202ENST00000421922 SPXQ9BT56 116 aa12.43□□□□□ -0.42
CCDC28B-202ENST00000421922 MRPL18Q9H0U6 180 aaKnown RBP12.43□□□□□ -0.42
CCDC28B-202ENST00000421922 SCRT2Q9NQ03 307 aa12.43□□□□□ -0.42
CCDC28B-202ENST00000421922 GSN-AS1Q9NRJ2 163 aa12.43□□□□□ -0.42
CCDC28B-202ENST00000421922 FABP9Q0Z7S8 132 aa12.42□□□□□ -0.42
CCDC28B-202ENST00000421922 KPRPQ5T749 579 aaPredicted RBP12.42□□□□□ -0.42
CCDC28B-202ENST00000421922 AP1S3Q96PC3 154 aa12.42□□□□□ -0.42
CCDC28B-202ENST00000421922 IGHV4-4A0A075B6R2 117 aa12.41□□□□□ -0.42
CCDC28B-202ENST00000421922 SPRY2O43597 315 aa12.41□□□□□ -0.42
CCDC28B-202ENST00000421922 APCSP02743 223 aa12.41□□□□□ -0.42
CCDC28B-202ENST00000421922 TRGC2P03986 189 aa12.41□□□□□ -0.42
CCDC28B-202ENST00000421922 PRM2P04554 102 aa12.41□□□□□ -0.42
CCDC28B-202ENST00000421922 FRMD6-AS1P0C7T7 363 aa12.41□□□□□ -0.42
CCDC28B-202ENST00000421922 SMIM17P0DL12 118 aa12.41□□□□□ -0.42
CCDC28B-202ENST00000421922 Q6ZWC4 215 aa12.41□□□□□ -0.42
CCDC28B-202ENST00000421922 SMIM9A6NGZ8 99 aa12.4□□□□□ -0.42
CCDC28B-202ENST00000421922 M0R2P5 195 aa12.4□□□□□ -0.42
CCDC28B-202ENST00000421922 PRB2P02812 416 aaPredicted RBP12.4□□□□□ -0.42
CCDC28B-202ENST00000421922 AZU1P20160 251 aa12.4□□□□□ -0.42
CCDC28B-202ENST00000421922 RAB5BP61020 215 aa12.4□□□□□ -0.42
CCDC28B-202ENST00000421922 ZNF876PQ49A33 203 aa12.4□□□□□ -0.42
CCDC28B-202ENST00000421922 RNASE8Q8TDE3 154 aaKnown RBP12.4□□□□□ -0.42
CCDC28B-202ENST00000421922 MSRB1Q9NZV6 116 aa12.4□□□□□ -0.42
CCDC28B-202ENST00000421922 NXPH4O95158 308 aa12.39□□□□□ -0.43
CCDC28B-202ENST00000421922 C11orf72Q8NBR9 251 aa12.39□□□□□ -0.43
CCDC28B-202ENST00000421922 TMEM191AQ9H0A3 160 aa12.39□□□□□ -0.43
CCDC28B-202ENST00000421922 TMA7Q9Y2S6 64 aaKnown RBP12.39□□□□□ -0.43
CCDC28B-202ENST00000421922 NOTCH1P46531 2555 aa12.39□□□□□ -0.43
CCDC28B-202ENST00000421922 MUC4Q99102 2169 aa12.38□□□□□ -0.43
CCDC28B-202ENST00000421922 DMRTA1Q5VZB9 504 aa12.38□□□□□ -0.43
CCDC28B-202ENST00000421922 GATD1Q8NB37 220 aa12.38□□□□□ -0.43
CCDC28B-202ENST00000421922 OR11H2Q8NH07 326 aa12.38□□□□□ -0.43
CCDC28B-202ENST00000421922 CMYA5Q8N3K9 4069 aa12.38□□□□□ -0.43
CCDC28B-202ENST00000421922 DEFB121Q5J5C9 76 aa12.37□□□□□ -0.43
CCDC28B-202ENST00000421922 RNF183Q96D59 192 aa12.37□□□□□ -0.43
CCDC28B-202ENST00000421922 MGPP08493 103 aa12.37□□□□□ -0.43
CCDC28B-202ENST00000421922 DPH3P1Q9H4G8 78 aa12.37□□□□□ -0.43
CCDC28B-202ENST00000421922 TRGV1A0A0A0MS02 117 aa12.36□□□□□ -0.43
CCDC28B-202ENST00000421922 EVI2AP22794 236 aa12.36□□□□□ -0.43
CCDC28B-202ENST00000421922 EMP1P54849 157 aa12.36□□□□□ -0.43
CCDC28B-202ENST00000421922 SLAQ13239 276 aa12.36□□□□□ -0.43
CCDC28B-202ENST00000421922 FAM104BQ5XKR9 115 aa12.36□□□□□ -0.43
CCDC28B-202ENST00000421922 AMN1Q8IY45 258 aa12.36□□□□□ -0.43
CCDC28B-202ENST00000421922 PTH2Q96A98 100 aa12.36□□□□□ -0.43
CCDC28B-202ENST00000421922 MRPL16Q9NX20 251 aaKnown RBP12.36□□□□□ -0.43
CCDC28B-202ENST00000421922 A8MWV9 139 aa12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 K7EIL1 84 aa12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 MIFP14174 115 aa12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 KIAA1644Q3SXP7 199 aa12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 PIK3CD-AS1Q5SR53 167 aa12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 C14orf178Q8N769 122 aaPredicted RBP12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 NDUFAF3Q9BU61 184 aa12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 NOP10Q9NPE3 64 aaKnown RBP12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 TP53TG1Q9Y2A0 90 aa12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 X6R8D5 127 aa12.35□□□□□ -0.43
CCDC28B-202ENST00000421922 DAZ2Q13117 558 aaKnown RBP12.34□□□□□ -0.43
CCDC28B-202ENST00000421922 FAM74A4Q5TZK3 123 aa12.34□□□□□ -0.43
CCDC28B-202ENST00000421922 IL17DQ8TAD2 202 aa12.34□□□□□ -0.43
CCDC28B-202ENST00000421922 LGALS9BQ3B8N2 356 aa12.33□□□□□ -0.44
CCDC28B-202ENST00000421922 A0A087WWL8 130 aa12.32□□□□□ -0.44
CCDC28B-202ENST00000421922 F5H697 171 aa12.32□□□□□ -0.44
CCDC28B-202ENST00000421922 CKS2P33552 79 aa12.32□□□□□ -0.44
CCDC28B-202ENST00000421922 ZNF56Q15929 161 aa12.32□□□□□ -0.44
CCDC28B-202ENST00000421922 IGHV4-28A0A0C4DH34 117 aa12.31□□□□□ -0.44
CCDC28B-202ENST00000421922 RAB4AP20338 218 aa12.31□□□□□ -0.44
CCDC28B-202ENST00000421922 SRIP30626 198 aa12.31□□□□□ -0.44
CCDC28B-202ENST00000421922 MRPL51Q4U2R6 128 aaKnown RBP12.31□□□□□ -0.44
CCDC28B-202ENST00000421922 ORMDL3Q8N138 153 aa12.31□□□□□ -0.44
CCDC28B-202ENST00000421922 JPT2Q9H910 190 aa12.31□□□□□ -0.44
CCDC28B-202ENST00000421922 TRGV2A0A075B6R0 118 aa12.3□□□□□ -0.44
CCDC28B-202ENST00000421922 RHODO00212 210 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms