RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ABCA2Q9BZC7 2435 aa6.27□□□□□ -1.41
USP54-203ENST00000418501 M0R2P5 195 aa6.27□□□□□ -1.41
USP54-203ENST00000418501 VCYO14598 125 aa6.27□□□□□ -1.41
USP54-203ENST00000418501 LAGE3Q14657 143 aa6.27□□□□□ -1.41
USP54-203ENST00000418501 TRPT1Q86TN4 253 aaKnown RBP6.27□□□□□ -1.41
USP54-203ENST00000418501 NUDT3O95989 172 aa6.27□□□□□ -1.41
USP54-203ENST00000418501 HTN1P15515 57 aa6.27□□□□□ -1.41
USP54-203ENST00000418501 Q71RC1 249 aaPredicted RBP6.27□□□□□ -1.41
USP54-203ENST00000418501 MUC21A0A0G2JKD1 596 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 MUC21A0A140T8X8 626 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 APOC4P55056 127 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 C12orf54Q6X4T0 127 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 ITPR1Q14643 2758 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 NOTCH2Q04721 2471 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 TMEM158Q8WZ71 300 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 PTH2Q96A98 100 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 TNFRSF18Q9Y5U5 241 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 PRSS1P07477 247 aa6.26□□□□□ -1.41
USP54-203ENST00000418501 IGLV1-51P01701 117 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 C18orf65Q6ZTR6 163 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 C14orf178Q8N769 122 aaPredicted RBP6.25□□□□□ -1.41
USP54-203ENST00000418501 C3orf56Q8N813 242 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 PMCHL2Q9BQD1 86 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 ZNF876PQ49A33 203 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 GDF5OSQ5U4N7 250 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 RNASE8Q8TDE3 154 aaKnown RBP6.25□□□□□ -1.41
USP54-203ENST00000418501 EVI2AP22794 236 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 SUMO2P61956 95 aaKnown RBP6.25□□□□□ -1.41
USP54-203ENST00000418501 FAM74A4Q5TZK3 123 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 IGHV3-16A0A0C4DH30 117 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 GNRH2O43555 120 aa6.25□□□□□ -1.41
USP54-203ENST00000418501 BSNQ9UPA5 3926 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 TRAV12-2A0A075B6T6 113 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 RPL32P62910 135 aaKnown RBP6.24□□□□□ -1.41
USP54-203ENST00000418501 FAM19A2Q8N3H0 131 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 C16orf74Q96GX8 76 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 DNAJC30Q96LL9 226 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 SMR3AQ99954 134 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 SCRT2Q9NQ03 307 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 PRB4P10163 310 aaPredicted RBP6.24□□□□□ -1.41
USP54-203ENST00000418501 SMIM2Q9BVW6 85 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 CYSLTR1Q9Y271 337 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 UBR5O95071 2799 aaPredicted RBP6.24□□□□□ -1.41
USP54-203ENST00000418501 IGHV3OR16-12A0A075B7B8 117 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 A8MTW9 85 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.24□□□□□ -1.41
USP54-203ENST00000418501 K7EP13 123 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 NXPH4O95158 308 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 IFI27P40305 119 aaPredicted RBP6.24□□□□□ -1.41
USP54-203ENST00000418501 SHISA2Q6UWI4 295 aa6.24□□□□□ -1.41
USP54-203ENST00000418501 NPYP01303 97 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 IFI27L1Q96BM0 104 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 C9orf85Q96MD7 179 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 SELENOKQ9Y6D0 94 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 NCR2O95944 276 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 HERVK_113P61574 105 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 Q8N1Y9 231 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 C3orf79P0CE67 100 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 PTTG1IPP53801 180 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 FXYD7P58549 80 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 XCL2Q9UBD3 114 aa6.23□□□□□ -1.41
USP54-203ENST00000418501 TRAV9-2A0A087WT02 112 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 IGHV1-24A0A0C4DH33 117 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 H0Y8G0 127 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 SYS1-DBNDD2H3BUS1 97 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 OR4C5Q8NGB2 326 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 C11orf21Q9P2W6 132 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 UQCR10Q9UDW1 63 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 SMIM9A6NGZ8 99 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 PRSS47A8MTI9 375 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 FRMD6-AS1P0C7T7 363 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 RHOHQ15669 191 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 PRR9Q5T870 116 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 SCGB3A1Q96QR1 104 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 CFAP46Q8IYW2 2715 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 TMEM97Q5BJF2 176 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 LINC00482Q8N8I6 264 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 CHTOPQ9Y3Y2 248 aaKnown RBP6.22□□□□□ -1.41
USP54-203ENST00000418501 CCDC168Q8NDH2 2452 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 TEX48A0A1B0GUV7 120 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 TMEM263Q8WUH6 116 aaKnown RBP6.22□□□□□ -1.41
USP54-203ENST00000418501 TMEM141Q96I45 108 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 CSTL1Q9H114 145 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 LOC400499M0QZD8 3231 aa6.22□□□□□ -1.41
USP54-203ENST00000418501 ATMQ13315 3056 aa6.21□□□□□ -1.41
USP54-203ENST00000418501 LGALS9BQ3B8N2 356 aa6.21□□□□□ -1.41
USP54-203ENST00000418501 SPATA45Q537H7 98 aa6.21□□□□□ -1.41
USP54-203ENST00000418501 AMTNQ6UX39 209 aa6.21□□□□□ -1.41
USP54-203ENST00000418501 Q6ZWC4 215 aa6.21□□□□□ -1.41
USP54-203ENST00000418501 DEFB125Q8N687 156 aa6.21□□□□□ -1.41
USP54-203ENST00000418501 TP53TG3Q9ULZ0 132 aa6.21□□□□□ -1.41
USP54-203ENST00000418501 RNASE3P12724 160 aaKnown RBP6.21□□□□□ -1.42
USP54-203ENST00000418501 RPL35AP18077 110 aaKnown RBP6.21□□□□□ -1.42
USP54-203ENST00000418501 ZFP2Q6ZN57 461 aa6.21□□□□□ -1.42
USP54-203ENST00000418501 MSRB1Q9NZV6 116 aa6.21□□□□□ -1.42
USP54-203ENST00000418501 RPL36AP83881 106 aaKnown RBP6.21□□□□□ -1.42
USP54-203ENST00000418501 LGALS9CQ6DKI2 356 aa6.21□□□□□ -1.42
USP54-203ENST00000418501 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.21□□□□□ -1.42
USP54-203ENST00000418501 RPL36ALQ969Q0 106 aaKnown RBP6.21□□□□□ -1.42
USP54-203ENST00000418501 RNF185Q96GF1 192 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms