RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 PMVKQ15126 192 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 UNQ9165/PRO28630Q6UXU0 137 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 DLX4Q92988 240 aaPredicted RBP7.53□□□□□ -1.2
COL17A1-203ENST00000393211 KLK15Q9H2R5 256 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 UBTD1Q9HAC8 227 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 DCHS1Q96JQ0 3298 aa7.53□□□□□ -1.2
COL17A1-203ENST00000393211 PTPRZ1P23471 2315 aaPredicted RBP7.53□□□□□ -1.2
COL17A1-203ENST00000393211 TRBV6-5A0A0K0K1A5 114 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 IGIPA6NJ69 53 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 C11orf86A6NJI1 115 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 AZU1P20160 251 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 LINC00315P59091 139 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 SCGB1D4Q6XE38 83 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 LCNL1Q6ZST4 164 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 TMEM219Q86XT9 240 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 ODF3Q96PU9 254 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 SPAG8Q99932 426 aaPredicted RBP7.52□□□□□ -1.2
COL17A1-203ENST00000393211 PGPEP1Q9NXJ5 209 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 ZNF580Q9UK33 172 aa7.52□□□□□ -1.2
COL17A1-203ENST00000393211 TSSC4Q9Y5U2 329 aaPredicted RBP7.52□□□□□ -1.2
COL17A1-203ENST00000393211 GNRH2O43555 120 aa7.52□□□□□ -1.21
COL17A1-203ENST00000393211 CRYGDP07320 174 aa7.52□□□□□ -1.21
COL17A1-203ENST00000393211 SRSF9Q13242 221 aaKnown RBP eCLIP7.52□□□□□ -1.21
COL17A1-203ENST00000393211 ETDBQ3ZM63 59 aa7.52□□□□□ -1.21
COL17A1-203ENST00000393211 ZFP2Q6ZN57 461 aa7.52□□□□□ -1.21
COL17A1-203ENST00000393211 SVIPQ8NHG7 77 aa7.52□□□□□ -1.21
COL17A1-203ENST00000393211 KIR2DL4Q99706 377 aa7.52□□□□□ -1.21
COL17A1-203ENST00000393211 VCX2Q9H322 139 aa7.52□□□□□ -1.21
COL17A1-203ENST00000393211 DAZ1Q9NQZ3 744 aaKnown RBP7.52□□□□□ -1.21
COL17A1-203ENST00000393211 MRPL16Q9NX20 251 aaKnown RBP7.52□□□□□ -1.21
COL17A1-203ENST00000393211 ABCA4P78363 2273 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 SPTBN2O15020 2390 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 AGRNO00468 2067 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 IGLV4-69A0A075B6H9 119 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 TRBV20-1A0A075B6N2 111 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 TRBV27A0A0K0K1C4 114 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 J3KRW8 73 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 LGALS9O00182 355 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 DUSP14O95147 198 aaKnown RBP7.51□□□□□ -1.21
COL17A1-203ENST00000393211 CD7P09564 240 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 UBE2D3P61077 147 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 UBE2D2P62837 147 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 CFAP126Q5VTH2 177 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 FAM159AQ6UWV7 190 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 RHPN1-AS1Q9BWJ2 59 aa7.51□□□□□ -1.21
COL17A1-203ENST00000393211 WNK2Q9Y3S1 2297 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 A0A0J9YY99 117 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 A6NDX4 124 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 NDUFS8O00217 210 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 TSHBP01222 138 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 IGLV1-40P01703 118 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 TRBV12-3P01733 135 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 AMTNQ6UX39 209 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 SH2D6Q7Z4S9 175 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 C1QTNF4Q9BXJ3 329 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 TP53TG1Q9Y2A0 90 aa7.5□□□□□ -1.21
COL17A1-203ENST00000393211 SMG1Q96Q15 3661 aaKnown RBP7.5□□□□□ -1.21
COL17A1-203ENST00000393211 RPL11P62913 178 aaKnown RBP7.49□□□□□ -1.21
COL17A1-203ENST00000393211 RHOHQ15669 191 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 ZNF876PQ49A33 203 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 SUMO4Q6EEV6 95 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 SLC25A29Q8N8R3 303 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 LINC00527Q9UJ94 153 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 PTPRQQ9UMZ3 2332 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 ADGRG4Q8IZF6 3080 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 KALRNO60229 2985 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 APOMO95445 188 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 TSPAN13O95857 204 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 PF4V1P10720 104 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 FOXI1Q12951 378 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 NFE4Q86UQ8 179 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 NDUFA11Q86Y39 141 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 SYT8Q8NBV8 401 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 PLEKHB2Q96CS7 222 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 C9orf85Q96MD7 179 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 GTSF1LQ9H1H1 148 aa7.49□□□□□ -1.21
COL17A1-203ENST00000393211 TLN1Q9Y490 2541 aaKnown RBP7.48□□□□□ -1.21
COL17A1-203ENST00000393211 A0A1B0GV72 72 aa7.48□□□□□ -1.21
COL17A1-203ENST00000393211 F6UB75 175 aa7.48□□□□□ -1.21
COL17A1-203ENST00000393211 NSUN5P1Q3KNT7 163 aa7.48□□□□□ -1.21
COL17A1-203ENST00000393211 SBSPONQ8IVN8 264 aa7.48□□□□□ -1.21
COL17A1-203ENST00000393211 PIMREGQ9BSJ6 248 aa7.48□□□□□ -1.21
COL17A1-203ENST00000393211 ASPMQ8IZT6 3477 aa7.48□□□□□ -1.21
COL17A1-203ENST00000393211 BSNQ9UPA5 3926 aa7.48□□□□□ -1.21
COL17A1-203ENST00000393211 DMXL2Q8TDJ6 3036 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 TMEM89A2RUT3 159 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 SDHAF1A6NFY7 115 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 M0QXV9 152 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 SPRY2O43597 315 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 IGHV3-30P01768 117 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 IGHV4-39P01824 125 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 IGHV3-30-5P0DP03 117 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 CFHR3Q02985 330 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 SMAGPQ0VAQ4 97 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 TCTEX1D4Q5JR98 221 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 DCANP1Q8TF63 244 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 SPTBN4Q9H254 2564 aa7.47□□□□□ -1.21
COL17A1-203ENST00000393211 LEPROTO15243 131 aa7.46□□□□□ -1.21
COL17A1-203ENST00000393211 IGHV3-11P01762 117 aa7.46□□□□□ -1.21
COL17A1-203ENST00000393211 TRPT1Q86TN4 253 aaKnown RBP7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms