RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 H3BMG7 143 aa7.41□□□□□ -1.22
COL6A3-204ENST00000392003 H3BUX3 64 aa7.41□□□□□ -1.22
COL6A3-204ENST00000392003 K7ERJ3 54 aa7.41□□□□□ -1.22
COL6A3-204ENST00000392003 IGHG4P01861 327 aa7.41□□□□□ -1.22
COL6A3-204ENST00000392003 IGHV4-38-2P0DP08 117 aa7.41□□□□□ -1.22
COL6A3-204ENST00000392003 MRPL53Q96EL3 112 aaKnown RBP7.41□□□□□ -1.22
COL6A3-204ENST00000392003 CLPSL1A2RUU4 121 aa7.4□□□□□ -1.22
COL6A3-204ENST00000392003 SAMD5Q5TGI4 173 aa7.4□□□□□ -1.22
COL6A3-204ENST00000392003 FAM19A5Q7Z5A7 132 aaPredicted RBP7.4□□□□□ -1.22
COL6A3-204ENST00000392003 ASH1LQ9NR48 2969 aaKnown RBP7.4□□□□□ -1.22
COL6A3-204ENST00000392003 IGLC6P0CF74 106 aa7.4□□□□□ -1.22
COL6A3-204ENST00000392003 IL17RELQ6ZVW7 336 aa7.4□□□□□ -1.22
COL6A3-204ENST00000392003 OR8A1Q8NGG7 326 aa7.4□□□□□ -1.22
COL6A3-204ENST00000392003 AGPAT4-IT1Q9H0P7 198 aa7.4□□□□□ -1.22
COL6A3-204ENST00000392003 SIGLEC8Q9NYZ4 499 aa7.4□□□□□ -1.22
COL6A3-204ENST00000392003 SLC25A16P16260 332 aa7.4□□□□□ -1.23
COL6A3-204ENST00000392003 MEIG1Q5JSS6 88 aa7.4□□□□□ -1.23
COL6A3-204ENST00000392003 MAP1LC3AQ9H492 121 aa7.4□□□□□ -1.23
COL6A3-204ENST00000392003 SEC11AP67812 179 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 LINC01559Q495D7 138 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 ZNF747Q9BV97 191 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 MS4A6AQ9H2W1 248 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 U3KQK5 164 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 ZFAND6Q6FIF0 208 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 C9orf139Q6ZV77 190 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 USMG5Q96IX5 58 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 ANKRD17O75179 2603 aaKnown RBP7.39□□□□□ -1.23
COL6A3-204ENST00000392003 HBDP02042 147 aa7.39□□□□□ -1.23
COL6A3-204ENST00000392003 CRIP2P52943 208 aaPredicted RBP7.39□□□□□ -1.23
COL6A3-204ENST00000392003 RPL11P62913 178 aaKnown RBP7.39□□□□□ -1.23
COL6A3-204ENST00000392003 TLN2Q9Y4G6 2542 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 SMKR1H3BMG3 65 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 NDUFV3P56181 108 aaKnown RBP7.38□□□□□ -1.23
COL6A3-204ENST00000392003 U3KQE9 123 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 RNF223E7ERA6 249 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 NCR2O95944 276 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 LINC01545Q5VT33 79 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 TEX29Q8N6K0 151 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 LINC01356Q8N9X3 169 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 PIFOQ8TCI5 191 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 DOPEY2Q9Y3R5 2298 aa7.38□□□□□ -1.23
COL6A3-204ENST00000392003 H3BUA1 57 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 NDUFA4O00483 81 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 NPYP01303 97 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 OR10J6PQ8NGY7 276 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 EDA2RQ9HAV5 297 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 IGF1P05019 195 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 C9orf47Q6ZRZ4 202 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 NFE4Q86UQ8 179 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 TRAV8-2A0A0B4J237 113 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 IGHV3-11P01762 117 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 MSRB1Q9NZV6 116 aa7.37□□□□□ -1.23
COL6A3-204ENST00000392003 IGHG2P01859 326 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 SPANXN1Q5VSR9 72 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 A6NDX4 124 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 SEC61GP60059 68 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 FAM106AQ4KMX7 169 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 LINC00477Q96M19 166 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 CNFNQ9BYD5 112 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 NXT2Q9NPJ8 142 aaKnown RBP7.36□□□□□ -1.23
COL6A3-204ENST00000392003 LENEPQ9Y5L5 61 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 OVOL1O14753 267 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 APOMO95445 188 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 C19orf54Q5BKX5 351 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 IFI27L1Q96BM0 104 aa7.36□□□□□ -1.23
COL6A3-204ENST00000392003 NOTCH2Q04721 2471 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 LOXL1Q08397 574 aaPredicted RBP7.35□□□□□ -1.23
COL6A3-204ENST00000392003 OR4X2Q8NGF9 303 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 A0A1B0GWB2 263 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 CACNG7P62955 275 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 LGALS9BQ3B8N2 356 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 LGALS9CQ6DKI2 356 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 IGKV3D-20A0A0C4DH25 116 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 S100A4P26447 101 aaKnown RBP7.35□□□□□ -1.23
COL6A3-204ENST00000392003 FXYD7P58549 80 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 FOXI1Q12951 378 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 KIR2DL5BQ8NHK3 375 aa7.35□□□□□ -1.23
COL6A3-204ENST00000392003 TRBV12-3P01733 135 aa7.34□□□□□ -1.23
COL6A3-204ENST00000392003 BLCAPP62952 87 aa7.34□□□□□ -1.23
COL6A3-204ENST00000392003 UNQ9165/PRO28630Q6UXU0 137 aa7.34□□□□□ -1.23
COL6A3-204ENST00000392003 KLK5Q9Y337 293 aaPredicted RBP7.34□□□□□ -1.23
COL6A3-204ENST00000392003 IGKV3-7A0A075B6H7 116 aa7.34□□□□□ -1.23
COL6A3-204ENST00000392003 J3QLI3 93 aa7.34□□□□□ -1.23
COL6A3-204ENST00000392003 EVI2AP22794 236 aa7.34□□□□□ -1.23
COL6A3-204ENST00000392003 RNF185Q96GF1 192 aa7.34□□□□□ -1.23
COL6A3-204ENST00000392003 TRAV21A0A0B4J279 112 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 SMAD7O15105 426 aaKnown RBP7.33□□□□□ -1.24
COL6A3-204ENST00000392003 LEPP41159 167 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 CRLF1O75462 422 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 AVPP01185 164 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 KRTAP10-9P60411 292 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 SRSF9Q13242 221 aaKnown RBP eCLIP7.33□□□□□ -1.24
COL6A3-204ENST00000392003 ZC2HC1BQ5TFG8 222 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 KLK15Q9H2R5 256 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 C11orf21Q9P2W6 132 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 SONP18583 2426 aaKnown RBP7.33□□□□□ -1.24
COL6A3-204ENST00000392003 UTP20O75691 2785 aaKnown RBP7.33□□□□□ -1.24
COL6A3-204ENST00000392003 A0A096LNJ9 63 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 F8W1H4 67 aa7.33□□□□□ -1.24
COL6A3-204ENST00000392003 H3BVH4 76 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms