RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ELANEP08246 267 aa10□□□□□ -0.81
COL6A3-203ENST00000353578 TMEM61Q8N0U2 210 aa10□□□□□ -0.81
COL6A3-203ENST00000353578 IGKV3D-7A0A0C4DH55 119 aa10□□□□□ -0.81
COL6A3-203ENST00000353578 PRO0628Q9UI54 55 aa10□□□□□ -0.81
COL6A3-203ENST00000353578 HIVEP3Q5T1R4 2406 aa10□□□□□ -0.81
COL6A3-203ENST00000353578 ADAMTS20P59510 1910 aa10□□□□□ -0.81
COL6A3-203ENST00000353578 MRPL36Q9P0J6 103 aaKnown RBP10□□□□□ -0.81
COL6A3-203ENST00000353578 TRBV30A0A0K0K1B3 111 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 SAP25Q8TEE9 199 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 IGLC6P0CF74 106 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 S4R3C0 116 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 C5orf63A6NC05 138 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 LY6EQ16553 131 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 CLUHP3Q96NS8 147 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 TMEM178BH3BS89 294 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 CFHR1Q03591 330 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 LTBP1Q14766 1721 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 IGKV1-6A0A0C4DH72 117 aa9.99□□□□□ -0.81
COL6A3-203ENST00000353578 CELA3BP08861 270 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 C16orf54Q6UWD8 224 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 LINC00526Q96FQ7 95 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 NXPH4O95158 308 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 TEX49A0A1B0GTD5 131 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 FAM120AOSQ5T036 256 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 CD177Q8N6Q3 437 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 CELA2AP08217 269 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 EFNA4P52798 201 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 CRYGCP07315 174 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 RHPN1-AS1Q9BWJ2 59 aa9.98□□□□□ -0.81
COL6A3-203ENST00000353578 IGKV1-16P04430 117 aa9.97□□□□□ -0.81
COL6A3-203ENST00000353578 HIST2H2BCQ6DN03 193 aa9.97□□□□□ -0.81
COL6A3-203ENST00000353578 HIST2H2BDQ6DRA6 164 aa9.97□□□□□ -0.81
COL6A3-203ENST00000353578 PFN2P35080 140 aa9.97□□□□□ -0.81
COL6A3-203ENST00000353578 FAM201AQ5SY85 155 aa9.97□□□□□ -0.81
COL6A3-203ENST00000353578 GATA3P23771 443 aa9.97□□□□□ -0.81
COL6A3-203ENST00000353578 GGNQ86UU5 652 aa9.97□□□□□ -0.81
COL6A3-203ENST00000353578 ZNF837Q96EG3 531 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-203ENST00000353578 TGFBR3LH3BV60 316 aa9.97□□□□□ -0.81
COL6A3-203ENST00000353578 RFPL3SP0C7P2 107 aa9.96□□□□□ -0.81
COL6A3-203ENST00000353578 IGHV1-46P01743 117 aa9.96□□□□□ -0.81
COL6A3-203ENST00000353578 DOPEY1Q5JWR5 2465 aa9.96□□□□□ -0.81
COL6A3-203ENST00000353578 TIMM17BO60830 172 aa9.96□□□□□ -0.81
COL6A3-203ENST00000353578 A0A1B0GXF2 115 aa9.96□□□□□ -0.82
COL6A3-203ENST00000353578 C20orf204Q6ZNR8 217 aa9.96□□□□□ -0.82
COL6A3-203ENST00000353578 ZNF462Q96JM2 2506 aa9.96□□□□□ -0.82
COL6A3-203ENST00000353578 RNASE6Q93091 150 aaKnown RBP9.95□□□□□ -0.82
COL6A3-203ENST00000353578 DEFB123Q8N688 67 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 COL5A1P20908 1838 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-203ENST00000353578 FHL1Q13642 323 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 GAFA1Q96PS6 74 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 MDFICQ9P1T7 246 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 IGHV3OR16-8A0A075B7F1 116 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 FAM19A3Q7Z5A8 133 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 CSRP1P21291 193 aaKnown RBP9.95□□□□□ -0.82
COL6A3-203ENST00000353578 C20orf197Q8N268 126 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 COX7B2Q8TF08 81 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 CFAP126Q5VTH2 177 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 FLVCR1-AS1Q8TAF5 88 aa9.95□□□□□ -0.82
COL6A3-203ENST00000353578 TRAV12-2A0A075B6T6 113 aa9.94□□□□□ -0.82
COL6A3-203ENST00000353578 EIF4EBP1Q13541 118 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-203ENST00000353578 CSDC2Q9Y534 153 aaKnown RBP9.94□□□□□ -0.82
COL6A3-203ENST00000353578 PTPRSQ13332 1948 aa9.94□□□□□ -0.82
COL6A3-203ENST00000353578 IGKV1D-17A0A075B6S4 117 aa9.94□□□□□ -0.82
COL6A3-203ENST00000353578 IGLV3-1P01715 115 aa9.94□□□□□ -0.82
COL6A3-203ENST00000353578 RPS28P62857 69 aaKnown RBP9.94□□□□□ -0.82
COL6A3-203ENST00000353578 SPRY4Q9C004 299 aa9.94□□□□□ -0.82
COL6A3-203ENST00000353578 GP9P14770 177 aa9.94□□□□□ -0.82
COL6A3-203ENST00000353578 IGHV3-73A0A0B4J1V6 119 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 COX6B1P14854 86 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 PRORYQ9H606 182 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 IGHV3-11P01762 117 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 NRGNQ92686 78 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 YPEL4Q96NS1 127 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 IGHV1-18A0A0C4DH31 117 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 LY6DQ14210 128 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 C10orf55Q5SWW7 151 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 A0A0U1RQV1 116 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 C14orf132Q9NPU4 83 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 CPAMD8Q8IZJ3 1885 aa9.93□□□□□ -0.82
COL6A3-203ENST00000353578 WIPF3A6NGB9 483 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 TRAV26-2A0A0B4J265 109 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 FAM222AQ5U5X8 452 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 CSRP2Q16527 193 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 C7orf69Q9H7B7 122 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 NUPR1O60356 82 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 IGKV1-39P01597 117 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 IGKV1D-39P04432 117 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 FOXE3Q13461 319 aa9.92□□□□□ -0.82
COL6A3-203ENST00000353578 TRAV4A0A0B4J268 109 aa9.91□□□□□ -0.82
COL6A3-203ENST00000353578 A6NED7 52 aa9.91□□□□□ -0.82
COL6A3-203ENST00000353578 CCDC168Q8NDH2 2452 aa9.91□□□□□ -0.82
COL6A3-203ENST00000353578 LINC01565O15544 149 aa9.9□□□□□ -0.82
COL6A3-203ENST00000353578 Q6JHZ5 121 aa9.9□□□□□ -0.82
COL6A3-203ENST00000353578 WT1-ASQ06250 92 aa9.9□□□□□ -0.82
COL6A3-203ENST00000353578 NDUFS5O43920 106 aa9.9□□□□□ -0.82
COL6A3-203ENST00000353578 TRAV23DV6A0A075B6W5 121 aa9.9□□□□□ -0.83
COL6A3-203ENST00000353578 MUC7Q8TAX7 377 aa9.9□□□□□ -0.83
COL6A3-203ENST00000353578 USP17L23D6RBM5 183 aa9.9□□□□□ -0.83
COL6A3-203ENST00000353578 BPY2O14599 106 aa9.9□□□□□ -0.83
COL6A3-203ENST00000353578 DKK1O94907 266 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms