RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RNF114Q9Y508 228 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 PRSS46E5RG02 174 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 LEPROTO15243 131 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 IGHG3P01860 377 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 PMVKQ15126 192 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 C8orf86Q6ZUL3 223 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 PPDPFLQ8WWR9 84 aa6.89□□□□□ -1.31
RTN3-202ENST00000339997 IGLC1P0CG04 106 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 CRYBA4P53673 196 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 CEND1Q8N111 149 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 GFRA4Q9GZZ7 299 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 FXYD2P54710 66 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 RBM3P98179 157 aaKnown RBP6.88□□□□□ -1.31
RTN3-202ENST00000339997 LYPD1Q8N2G4 141 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 OR11H6Q8NGC7 330 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 PTH2Q96A98 100 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 NDUFA12Q9UI09 145 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 TRBV25-1A0A075B6N4 114 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 LOXP28300 417 aaPredicted RBP6.88□□□□□ -1.31
RTN3-202ENST00000339997 DEFB125Q8N687 156 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 Q8N8P6 123 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 RITA1Q96K30 269 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 PRO1854Q9UHT4 67 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 PRSS29PA6NIE9 313 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 UBE2BP63146 152 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 DYNAPQ8N1N2 210 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 ZNRF2Q8NHG8 242 aa6.88□□□□□ -1.31
RTN3-202ENST00000339997 F8VRH5 84 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 F8W1H4 67 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 LGALS9BQ3B8N2 356 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 LGALS9CQ6DKI2 356 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 DAND5Q8N907 189 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 CARD19Q96LW7 228 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 IGHV2-70DA0A0C4DH43 119 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 C8orf31Q8N9H6 132 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 C15orf53Q8NAA6 179 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 LTAP01374 205 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 RPL39LQ96EH5 51 aaKnown RBP6.87□□□□□ -1.31
RTN3-202ENST00000339997 DAZ1Q9NQZ3 744 aaKnown RBP6.87□□□□□ -1.31
RTN3-202ENST00000339997 ZNF492Q9P255 531 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 PLXNA3P51805 1871 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 C11orf52Q96A22 123 aa6.87□□□□□ -1.31
RTN3-202ENST00000339997 ARHGAP32A7KAX9 2087 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 J3QQQ9 107 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 NDUFB1O75438 58 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 FAM231DQ6ZW35 169 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 ZNF491Q8N8L2 437 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 CDKN1BP46527 198 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 WIPF2Q8TF74 440 aaPredicted RBP6.86□□□□□ -1.31
RTN3-202ENST00000339997 TNRC6AQ8NDV7 1962 aaKnown RBP6.86□□□□□ -1.31
RTN3-202ENST00000339997 DCHS2Q6V1P9 2916 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 WISP2O76076 250 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 IFITM1P13164 125 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 PCNX3Q9H6A9 2034 aa6.86□□□□□ -1.31
RTN3-202ENST00000339997 IGKV1OR2-108A0A075B7D4 117 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 MBD3L4A6NDZ8 208 aaPredicted RBP6.85□□□□□ -1.31
RTN3-202ENST00000339997 MBD3L3A6NE82 208 aaPredicted RBP6.85□□□□□ -1.31
RTN3-202ENST00000339997 MBD3L5A6NJ08 208 aaPredicted RBP6.85□□□□□ -1.31
RTN3-202ENST00000339997 C22orf46C9J442 243 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 GNLYP22749 145 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 GAGE6Q13070 117 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 LINC01559Q495D7 138 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 MBD3L2Q8NHZ7 208 aaPredicted RBP6.85□□□□□ -1.31
RTN3-202ENST00000339997 CFHR4Q92496 578 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 PYGO2Q9BRQ0 406 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 AGPAT4-IT1Q9H0P7 198 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 TRBV7-1A0A0A6YYK4 115 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 E7EUB6 86 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 PDE6HQ13956 83 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 COA6Q5JTJ3 125 aaKnown RBP6.85□□□□□ -1.31
RTN3-202ENST00000339997 GAGE7O76087 117 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 GAGE12FP0CL80 117 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 GAGE12GP0CL81 117 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 GAGE12IP0CL82 117 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 PATE2Q6UY27 113 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 MRPL36Q9P0J6 103 aaKnown RBP6.85□□□□□ -1.31
RTN3-202ENST00000339997 PLXNB3Q9ULL4 1909 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 RBAKDNA6NC62 111 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 GTSF1Q8WW33 167 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 ALPK3Q96L96 1907 aa6.85□□□□□ -1.31
RTN3-202ENST00000339997 MRPL23Q16540 153 aaKnown RBP6.84□□□□□ -1.31
RTN3-202ENST00000339997 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.84□□□□□ -1.31
RTN3-202ENST00000339997 IGKV2-29A2NJV5 120 aaPredicted RBP6.84□□□□□ -1.31
RTN3-202ENST00000339997 TAX1BP3O14907 124 aa6.84□□□□□ -1.31
RTN3-202ENST00000339997 GRNP28799 593 aaKnown RBP6.84□□□□□ -1.31
RTN3-202ENST00000339997 NBL1P41271 181 aa6.84□□□□□ -1.31
RTN3-202ENST00000339997 MUC4Q99102 2169 aa6.84□□□□□ -1.31
RTN3-202ENST00000339997 C11orf53Q8IXP5 236 aa6.84□□□□□ -1.31
RTN3-202ENST00000339997 Q71RC1 249 aaPredicted RBP6.84□□□□□ -1.32
RTN3-202ENST00000339997 MTORP42345 2549 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 IGHV4-4A0A075B6R2 117 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 LY6G6EA0A0G2JKS1 128 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 FNDC10F2Z333 226 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 ETV2O00321 342 aaPredicted RBP6.83□□□□□ -1.32
RTN3-202ENST00000339997 CRLF1O75462 422 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 IGLV3-1P01715 115 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 LOXL1Q08397 574 aaPredicted RBP6.83□□□□□ -1.32
RTN3-202ENST00000339997 ZNF833PQ6ZTB9 187 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 PKIGQ9Y2B9 76 aa6.83□□□□□ -1.32
RTN3-202ENST00000339997 U3KQA8 63 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms