RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GAGE12FP0CL80 117 aa15.76■□□□□ 0.11
SDC3-202ENST00000339394 GAGE12GP0CL81 117 aa15.76■□□□□ 0.11
SDC3-202ENST00000339394 GAGE12IP0CL82 117 aa15.76■□□□□ 0.11
SDC3-202ENST00000339394 DAD1P61803 113 aa15.76■□□□□ 0.11
SDC3-202ENST00000339394 OR10G8Q8NGN5 311 aa15.76■□□□□ 0.11
SDC3-202ENST00000339394 RASL10AQ92737 203 aa15.76■□□□□ 0.11
SDC3-202ENST00000339394 SSBP4Q9BWG4 385 aaPredicted RBP15.76■□□□□ 0.11
SDC3-202ENST00000339394 DNAH7Q8WXX0 4024 aa15.76■□□□□ 0.11
SDC3-202ENST00000339394 NDUFA5Q16718 116 aa15.75■□□□□ 0.11
SDC3-202ENST00000339394 CT83Q5H943 113 aa15.75■□□□□ 0.11
SDC3-202ENST00000339394 V9GYV3 84 aa15.75■□□□□ 0.11
SDC3-202ENST00000339394 MED14OSP0DP75 135 aa15.75■□□□□ 0.11
SDC3-202ENST00000339394 ZNF876PQ49A33 203 aa15.75■□□□□ 0.11
SDC3-202ENST00000339394 PHLDA3Q9Y5J5 127 aa15.75■□□□□ 0.11
SDC3-202ENST00000339394 OR5AL1P0C617 328 aa15.74■□□□□ 0.11
SDC3-202ENST00000339394 IGLC6P0CF74 106 aa15.74■□□□□ 0.11
SDC3-202ENST00000339394 Q6ZTC4 211 aa15.74■□□□□ 0.11
SDC3-202ENST00000339394 WWC2-AS2Q96NR7 200 aa15.74■□□□□ 0.11
SDC3-202ENST00000339394 TPPP3Q9BW30 176 aa15.74■□□□□ 0.11
SDC3-202ENST00000339394 A8MWL6 223 aa15.73■□□□□ 0.11
SDC3-202ENST00000339394 SNAI2O43623 268 aa15.73■□□□□ 0.11
SDC3-202ENST00000339394 FER1L6-AS1Q8NA97 138 aa15.73■□□□□ 0.11
SDC3-202ENST00000339394 GTSF1Q8WW33 167 aa15.73■□□□□ 0.11
SDC3-202ENST00000339394 CARHSP1Q9Y2V2 147 aaKnown RBP15.73■□□□□ 0.11
SDC3-202ENST00000339394 TRGV2A0A075B6R0 118 aa15.72■□□□□ 0.11
SDC3-202ENST00000339394 DMRTA1Q5VZB9 504 aa15.72■□□□□ 0.11
SDC3-202ENST00000339394 PTH2Q96A98 100 aa15.72■□□□□ 0.11
SDC3-202ENST00000339394 MUC21A0A0G2JKD1 596 aa15.71■□□□□ 0.11
SDC3-202ENST00000339394 MUC21A0A140T8X8 626 aa15.71■□□□□ 0.11
SDC3-202ENST00000339394 A0A1W2PPQ1 181 aa15.71■□□□□ 0.11
SDC3-202ENST00000339394 TSKUQ8WUA8 353 aa15.71■□□□□ 0.11
SDC3-202ENST00000339394 M0R381 172 aa15.7■□□□□ 0.1
SDC3-202ENST00000339394 RNF212Q495C1 297 aa15.7■□□□□ 0.1
SDC3-202ENST00000339394 OR10AG1Q8NH19 301 aa15.7■□□□□ 0.1
SDC3-202ENST00000339394 C18orf15Q96N68 181 aa15.7■□□□□ 0.1
SDC3-202ENST00000339394 FOXA3P55318 350 aaPredicted RBP15.7■□□□□ 0.1
SDC3-202ENST00000339394 SSTP61278 116 aa15.7■□□□□ 0.1
SDC3-202ENST00000339394 LYZL1Q6UWQ5 148 aa15.7■□□□□ 0.1
SDC3-202ENST00000339394 F2Z2F3 143 aa15.69■□□□□ 0.1
SDC3-202ENST00000339394 PIK3CD-AS1Q5SR53 167 aa15.69■□□□□ 0.1
SDC3-202ENST00000339394 ZFP82Q8N141 532 aa15.69■□□□□ 0.1
SDC3-202ENST00000339394 SYT8Q8NBV8 401 aa15.69■□□□□ 0.1
SDC3-202ENST00000339394 NDUFAF3Q9BU61 184 aa15.69■□□□□ 0.1
SDC3-202ENST00000339394 GFRA4Q9GZZ7 299 aa15.69■□□□□ 0.1
SDC3-202ENST00000339394 FAM231BA6NCW3 169 aa15.68■□□□□ 0.1
SDC3-202ENST00000339394 PPP1R2P9O14990 202 aa15.68■□□□□ 0.1
SDC3-202ENST00000339394 MT-ND4LP03901 98 aa15.68■□□□□ 0.1
SDC3-202ENST00000339394 SPANXN1Q5VSR9 72 aa15.68■□□□□ 0.1
SDC3-202ENST00000339394 CSMD3Q7Z407 3707 aa15.68■□□□□ 0.1
SDC3-202ENST00000339394 APOC3P02656 99 aa15.67■□□□□ 0.1
SDC3-202ENST00000339394 CTRLP40313 264 aa15.67■□□□□ 0.1
SDC3-202ENST00000339394 POM121L12Q8N7R1 296 aa15.67■□□□□ 0.1
SDC3-202ENST00000339394 ANAPC16Q96DE5 110 aa15.67■□□□□ 0.1
SDC3-202ENST00000339394 MUC4Q99102 2169 aa15.67■□□□□ 0.1
SDC3-202ENST00000339394 HIGD1CA8MV81 97 aa15.66■□□□□ 0.1
SDC3-202ENST00000339394 NXPH4O95158 308 aa15.66■□□□□ 0.1
SDC3-202ENST00000339394 ATP5G1P05496 136 aa15.66■□□□□ 0.1
SDC3-202ENST00000339394 PHLDA1Q8WV24 401 aaPredicted RBP15.66■□□□□ 0.1
SDC3-202ENST00000339394 IGHV3-53P01767 116 aa15.66■□□□□ 0.1
SDC3-202ENST00000339394 HTN3P15516 51 aa15.66■□□□□ 0.1
SDC3-202ENST00000339394 MUC7Q8TAX7 377 aa15.66■□□□□ 0.1
SDC3-202ENST00000339394 PGLYRP4Q96LB8 373 aa15.66■□□□□ 0.1
SDC3-202ENST00000339394 JPT2Q9H910 190 aa15.66■□□□□ 0.1
SDC3-202ENST00000339394 DEFB131BA0A096LNP1 70 aa15.65■□□□□ 0.1
SDC3-202ENST00000339394 TRAV10A0A0B4J240 114 aa15.65■□□□□ 0.1
SDC3-202ENST00000339394 CFAP126Q5VTH2 177 aa15.65■□□□□ 0.1
SDC3-202ENST00000339394 OR4C5Q8NGB2 326 aa15.65■□□□□ 0.1
SDC3-202ENST00000339394 ZNF479Q96JC4 524 aa15.65■□□□□ 0.1
SDC3-202ENST00000339394 CNFNQ9BYD5 112 aa15.65■□□□□ 0.1
SDC3-202ENST00000339394 IGHV4-4A0A075B6R2 117 aa15.64■□□□□ 0.09
SDC3-202ENST00000339394 TRAV4A0A0B4J268 109 aa15.64■□□□□ 0.09
SDC3-202ENST00000339394 SMIM27A0A1W2PRY6 76 aa15.64■□□□□ 0.09
SDC3-202ENST00000339394 CACNG7P62955 275 aa15.64■□□□□ 0.09
SDC3-202ENST00000339394 CLRN3Q8NCR9 226 aa15.64■□□□□ 0.09
SDC3-202ENST00000339394 MSRB1Q9NZV6 116 aa15.64■□□□□ 0.09
SDC3-202ENST00000339394 A8MWV9 139 aa15.63■□□□□ 0.09
SDC3-202ENST00000339394 RS1O15537 224 aa15.63■□□□□ 0.09
SDC3-202ENST00000339394 NTF3P20783 257 aa15.63■□□□□ 0.09
SDC3-202ENST00000339394 WDR73Q6P4I2 378 aa15.63■□□□□ 0.09
SDC3-202ENST00000339394 SVBPQ8N300 66 aa15.63■□□□□ 0.09
SDC3-202ENST00000339394 NUP35Q8NFH5 326 aa15.63■□□□□ 0.09
SDC3-202ENST00000339394 NAT8BQ9UHF3 227 aa15.63■□□□□ 0.09
SDC3-202ENST00000339394 F5H768 121 aa15.62■□□□□ 0.09
SDC3-202ENST00000339394 HOXA5P20719 270 aa15.62■□□□□ 0.09
SDC3-202ENST00000339394 SAMD10Q9BYL1 202 aa15.62■□□□□ 0.09
SDC3-202ENST00000339394 C7orf77A4D0Y5 90 aa15.62■□□□□ 0.09
SDC3-202ENST00000339394 STARD9Q9P2P6 4700 aa15.61■□□□□ 0.09
SDC3-202ENST00000339394 RHEBQ15382 184 aa15.61■□□□□ 0.09
SDC3-202ENST00000339394 TWIST1Q15672 202 aa15.61■□□□□ 0.09
SDC3-202ENST00000339394 CTDSP1Q9GZU7 261 aa15.61■□□□□ 0.09
SDC3-202ENST00000339394 DYNC2H1Q8NCM8 4307 aaKnown RBP15.6■□□□□ 0.09
SDC3-202ENST00000339394 A0A087WWL8 130 aa15.6■□□□□ 0.09
SDC3-202ENST00000339394 FHL2Q14192 279 aa15.6■□□□□ 0.09
SDC3-202ENST00000339394 ZFAND6Q6FIF0 208 aa15.6■□□□□ 0.09
SDC3-202ENST00000339394 IGHV3-73A0A0B4J1V6 119 aa15.59■□□□□ 0.09
SDC3-202ENST00000339394 A0A1B0GUT8 65 aa15.59■□□□□ 0.09
SDC3-202ENST00000339394 SNAPINO95295 136 aa15.59■□□□□ 0.09
SDC3-202ENST00000339394 CRYGDP07320 174 aa15.59■□□□□ 0.09
SDC3-202ENST00000339394 UFSP1Q6NVU6 142 aa15.59■□□□□ 0.09
SDC3-202ENST00000339394 CEMP1Q6PRD7 247 aaPredicted RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms