RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 DUSP14O95147 198 aaKnown RBP10.31□□□□□ -0.76
SKA3-201ENST00000298260 COX8CQ7Z4L0 72 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 C14orf178Q8N769 122 aaPredicted RBP10.31□□□□□ -0.76
SKA3-201ENST00000298260 NTN5Q8WTR8 489 aaPredicted RBP10.31□□□□□ -0.76
SKA3-201ENST00000298260 HIF1ANQ9NWT6 349 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 TEX49A0A1B0GTD5 131 aa10.3□□□□□ -0.76
SKA3-201ENST00000298260 EIF4EBP3O60516 100 aaPredicted RBP10.3□□□□□ -0.76
SKA3-201ENST00000298260 BSPH1Q075Z2 132 aa10.3□□□□□ -0.76
SKA3-201ENST00000298260 EPG5Q9HCE0 2579 aa10.3□□□□□ -0.76
SKA3-201ENST00000298260 A0A0J9YY99 117 aa10.3□□□□□ -0.76
SKA3-201ENST00000298260 RHODO00212 210 aa10.3□□□□□ -0.76
SKA3-201ENST00000298260 MFAP4P55083 255 aa10.3□□□□□ -0.76
SKA3-201ENST00000298260 C21orf62Q9NYP8 219 aa10.3□□□□□ -0.76
SKA3-201ENST00000298260 IGHV3-64A0A075B6Q5 118 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 SCGB2A1O75556 95 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 SNCGO76070 127 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 MGPP08493 103 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 PRR9Q5T870 116 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 GAGE12JA6NER3 117 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 GAGE7O76087 117 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 CTSGP08311 255 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 GAGE12FP0CL80 117 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 GAGE12GP0CL81 117 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 GAGE12IP0CL82 117 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 ARL3P36405 182 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 GAGE4Q13068 117 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 AKAP6Q13023 2319 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 TRAV12-1A0A0B4J245 112 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 MBD3L4A6NDZ8 208 aaPredicted RBP10.29□□□□□ -0.76
SKA3-201ENST00000298260 MBD3L3A6NE82 208 aaPredicted RBP10.29□□□□□ -0.76
SKA3-201ENST00000298260 MBD3L5A6NJ08 208 aaPredicted RBP10.29□□□□□ -0.76
SKA3-201ENST00000298260 IGHV4-39P01824 125 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 CRYGDP07320 174 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 Q6ZS92 163 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 MBD3L2Q8NHZ7 208 aaPredicted RBP10.29□□□□□ -0.76
SKA3-201ENST00000298260 CACNA1AO00555 2505 aa10.29□□□□□ -0.76
SKA3-201ENST00000298260 SUMO2P61956 95 aaKnown RBP10.28□□□□□ -0.76
SKA3-201ENST00000298260 RPL39P62891 51 aaKnown RBP10.28□□□□□ -0.76
SKA3-201ENST00000298260 TTC32Q5I0X7 151 aa10.28□□□□□ -0.76
SKA3-201ENST00000298260 C8orf31Q8N9H6 132 aa10.28□□□□□ -0.76
SKA3-201ENST00000298260 TOMM6Q96B49 74 aa10.28□□□□□ -0.76
SKA3-201ENST00000298260 SRD5A1P18405 259 aa10.28□□□□□ -0.76
SKA3-201ENST00000298260 ZNF672Q499Z4 452 aaPredicted RBP10.28□□□□□ -0.76
SKA3-201ENST00000298260 C10orf126Q8N4M7 172 aa10.27□□□□□ -0.77
SKA3-201ENST00000298260 IGLV11-55A0A075B6I3 123 aa10.27□□□□□ -0.77
SKA3-201ENST00000298260 LINC01619G3V211 115 aa10.27□□□□□ -0.77
SKA3-201ENST00000298260 IGHV3-30P01768 117 aa10.27□□□□□ -0.77
SKA3-201ENST00000298260 IGHV3-30-5P0DP03 117 aa10.27□□□□□ -0.77
SKA3-201ENST00000298260 TMEM170BQ5T4T1 132 aa10.27□□□□□ -0.77
SKA3-201ENST00000298260 Q8N1Y9 231 aa10.27□□□□□ -0.77
SKA3-201ENST00000298260 TRAV17A0A0B4J275 112 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 NBR2O15453 112 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 RAB1BQ9H0U4 201 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 CFAP46Q8IYW2 2715 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 A4D1N5 150 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 LY6HO94772 140 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 TSHBP01222 138 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 IFITM1P13164 125 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 SBSPONQ8IVN8 264 aa10.26□□□□□ -0.77
SKA3-201ENST00000298260 DYNLRB1Q9NP97 96 aa10.25□□□□□ -0.77
SKA3-201ENST00000298260 PRO1854Q9UHT4 67 aa10.25□□□□□ -0.77
SKA3-201ENST00000298260 IGLV4-69A0A075B6H9 119 aa10.25□□□□□ -0.77
SKA3-201ENST00000298260 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.25□□□□□ -0.77
SKA3-201ENST00000298260 OPRPNQ99935 248 aaPredicted RBP10.25□□□□□ -0.77
SKA3-201ENST00000298260 VCX2Q9H322 139 aa10.25□□□□□ -0.77
SKA3-201ENST00000298260 RNF223E7ERA6 249 aa10.25□□□□□ -0.77
SKA3-201ENST00000298260 C15orf53Q8NAA6 179 aa10.25□□□□□ -0.77
SKA3-201ENST00000298260 ODF3Q96PU9 254 aa10.25□□□□□ -0.77
SKA3-201ENST00000298260 Q1RN00 199 aa10.24□□□□□ -0.77
SKA3-201ENST00000298260 ZNF580Q9UK33 172 aa10.24□□□□□ -0.77
SKA3-201ENST00000298260 TRAV2A0A0B4J234 112 aa10.24□□□□□ -0.77
SKA3-201ENST00000298260 TMEM262E9PQX1 116 aa10.24□□□□□ -0.77
SKA3-201ENST00000298260 ORMDL2Q53FV1 153 aa10.24□□□□□ -0.77
SKA3-201ENST00000298260 RNASE6Q93091 150 aaKnown RBP10.24□□□□□ -0.77
SKA3-201ENST00000298260 FAM110AQ9BQ89 295 aa10.24□□□□□ -0.77
SKA3-201ENST00000298260 CHCHD5Q9BSY4 110 aa10.23□□□□□ -0.77
SKA3-201ENST00000298260 TP53TG1Q9Y2A0 90 aa10.23□□□□□ -0.77
SKA3-201ENST00000298260 CENPEQ02224 2701 aa10.23□□□□□ -0.77
SKA3-201ENST00000298260 ADARB2-AS1A8MUL3 147 aa10.23□□□□□ -0.77
SKA3-201ENST00000298260 ZNRF2Q8NHG8 242 aa10.23□□□□□ -0.77
SKA3-201ENST00000298260 JPT2Q9H910 190 aa10.23□□□□□ -0.77
SKA3-201ENST00000298260 CLEC3BP05452 202 aa10.22□□□□□ -0.77
SKA3-201ENST00000298260 MEIG1Q5JSS6 88 aa10.22□□□□□ -0.77
SKA3-201ENST00000298260 Q6ZSV7 163 aa10.22□□□□□ -0.77
SKA3-201ENST00000298260 CUBNO60494 3623 aa10.22□□□□□ -0.77
SKA3-201ENST00000298260 MUC4Q99102 2169 aa10.22□□□□□ -0.77
SKA3-201ENST00000298260 SRSF2Q01130 221 aaKnown RBP10.22□□□□□ -0.77
SKA3-201ENST00000298260 LYRM7Q5U5X0 104 aa10.22□□□□□ -0.77
SKA3-201ENST00000298260 UTP20O75691 2785 aaKnown RBP10.21□□□□□ -0.77
SKA3-201ENST00000298260 FLNCQ14315 2725 aa10.21□□□□□ -0.77
SKA3-201ENST00000298260 LY6LH3BQJ8 138 aa10.21□□□□□ -0.77
SKA3-201ENST00000298260 GNRH2O43555 120 aa10.21□□□□□ -0.77
SKA3-201ENST00000298260 BUB3O43684 328 aa10.21□□□□□ -0.77
SKA3-201ENST00000298260 S100A4P26447 101 aaKnown RBP10.21□□□□□ -0.77
SKA3-201ENST00000298260 PRR30Q53SZ7 412 aaPredicted RBP10.21□□□□□ -0.78
SKA3-201ENST00000298260 NUP37Q8NFH4 326 aa10.21□□□□□ -0.78
SKA3-201ENST00000298260 IGHV3-33P01772 117 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 IGSF10Q6WRI0 2623 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 SLC25A29Q8N8R3 303 aa10.2□□□□□ -0.78
SKA3-201ENST00000298260 SLC50A1Q9BRV3 221 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 192.1 ms