RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 K7EIL1 84 aa13.71□□□□□ -0.21
PDLIM3-202ENST00000284770 SNAI2O43623 268 aa13.71□□□□□ -0.21
PDLIM3-202ENST00000284770 PRM2P04554 102 aa13.71□□□□□ -0.21
PDLIM3-202ENST00000284770 RIGQ13278 110 aa13.71□□□□□ -0.21
PDLIM3-202ENST00000284770 MRPL18Q9H0U6 180 aaKnown RBP13.71□□□□□ -0.21
PDLIM3-202ENST00000284770 TRGV11A0A075B6L2 103 aa13.71□□□□□ -0.22
PDLIM3-202ENST00000284770 HLA-DQA1P01909 254 aa13.71□□□□□ -0.22
PDLIM3-202ENST00000284770 OR5AL1P0C617 328 aa13.71□□□□□ -0.22
PDLIM3-202ENST00000284770 S100A4P26447 101 aaKnown RBP13.71□□□□□ -0.22
PDLIM3-202ENST00000284770 BORCS7Q96B45 105 aa13.71□□□□□ -0.22
PDLIM3-202ENST00000284770 IGHV3-16A0A0C4DH30 117 aa13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 MUC21A0A0G2JKD1 596 aa13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 MUC21A0A140T8X8 626 aa13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 A0A1B0GW15 77 aa13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 RNASE3P12724 160 aaKnown RBP13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 RAB4BP61018 213 aa13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 Q6ZWC4 215 aa13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 GATD1Q8NB37 220 aa13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 MDFICQ9P1T7 246 aa13.7□□□□□ -0.22
PDLIM3-202ENST00000284770 MUC4Q99102 2169 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 H3BVH4 76 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BKO60814 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BJP06899 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 TRGC1P0CF51 173 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BOP23527 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BBP33778 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BDP58876 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BCP62807 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST2H2BEQ16778 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 DEFB135Q30KP9 77 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BHQ93079 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BNQ99877 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 HIST1H2BMQ99879 126 aa13.69□□□□□ -0.22
PDLIM3-202ENST00000284770 MED14OSP0DP75 135 aa13.68□□□□□ -0.22
PDLIM3-202ENST00000284770 SCRT2Q9NQ03 307 aa13.68□□□□□ -0.22
PDLIM3-202ENST00000284770 AZU1P20160 251 aa13.68□□□□□ -0.22
PDLIM3-202ENST00000284770 NTF3P20783 257 aa13.68□□□□□ -0.22
PDLIM3-202ENST00000284770 SLAQ13239 276 aa13.68□□□□□ -0.22
PDLIM3-202ENST00000284770 OR10AG1Q8NH19 301 aa13.68□□□□□ -0.22
PDLIM3-202ENST00000284770 RCHY1Q96PM5 261 aa13.68□□□□□ -0.22
PDLIM3-202ENST00000284770 S100A8P05109 93 aa13.67□□□□□ -0.22
PDLIM3-202ENST00000284770 ZNF493Q6ZR52 646 aa13.67□□□□□ -0.22
PDLIM3-202ENST00000284770 MSRB1Q9NZV6 116 aa13.67□□□□□ -0.22
PDLIM3-202ENST00000284770 TIMM8BQ9Y5J9 83 aaPredicted RBP13.67□□□□□ -0.22
PDLIM3-202ENST00000284770 IGHV4-4A0A075B6R2 117 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 SSTP61278 116 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 DEFB121Q5J5C9 76 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 C11orf72Q8NBR9 251 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 RNF183Q96D59 192 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 C9orf85Q96MD7 179 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 APCSP02743 223 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 TWIST1Q15672 202 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 RRN3P1Q2M238 152 aa13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 RNASE8Q8TDE3 154 aaKnown RBP13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 TMEM263Q8WUH6 116 aaKnown RBP13.66□□□□□ -0.22
PDLIM3-202ENST00000284770 ZNF415Q09FC8 603 aa13.65□□□□□ -0.22
PDLIM3-202ENST00000284770 GSN-AS1Q9NRJ2 163 aa13.65□□□□□ -0.22
PDLIM3-202ENST00000284770 PHLDA3Q9Y5J5 127 aa13.65□□□□□ -0.22
PDLIM3-202ENST00000284770 X6R8D5 127 aa13.65□□□□□ -0.22
PDLIM3-202ENST00000284770 SMIM9A6NGZ8 99 aa13.64□□□□□ -0.23
PDLIM3-202ENST00000284770 CACNG7P62955 275 aa13.64□□□□□ -0.23
PDLIM3-202ENST00000284770 C16orf74Q96GX8 76 aa13.64□□□□□ -0.23
PDLIM3-202ENST00000284770 SPRY2O43597 315 aa13.63□□□□□ -0.23
PDLIM3-202ENST00000284770 KIAA1644Q3SXP7 199 aa13.63□□□□□ -0.23
PDLIM3-202ENST00000284770 OR11H2Q8NH07 326 aa13.63□□□□□ -0.23
PDLIM3-202ENST00000284770 SPANXN1Q5VSR9 72 aa13.63□□□□□ -0.23
PDLIM3-202ENST00000284770 TP53TG1Q9Y2A0 90 aa13.63□□□□□ -0.23
PDLIM3-202ENST00000284770 NXPH4O95158 308 aa13.62□□□□□ -0.23
PDLIM3-202ENST00000284770 TMEM191AQ9H0A3 160 aa13.62□□□□□ -0.23
PDLIM3-202ENST00000284770 SBSPONQ8IVN8 264 aa13.61□□□□□ -0.23
PDLIM3-202ENST00000284770 SPXQ9BT56 116 aa13.61□□□□□ -0.23
PDLIM3-202ENST00000284770 PLAC8L1A1L4L8 177 aa13.6□□□□□ -0.23
PDLIM3-202ENST00000284770 M0R381 172 aa13.6□□□□□ -0.23
PDLIM3-202ENST00000284770 DMRTA1Q5VZB9 504 aa13.6□□□□□ -0.23
PDLIM3-202ENST00000284770 IL17DQ8TAD2 202 aa13.6□□□□□ -0.23
PDLIM3-202ENST00000284770 OVOL2Q9BRP0 275 aa13.6□□□□□ -0.23
PDLIM3-202ENST00000284770 FAM104BQ5XKR9 115 aa13.6□□□□□ -0.23
PDLIM3-202ENST00000284770 MRAPQ8TCY5 172 aa13.6□□□□□ -0.23
PDLIM3-202ENST00000284770 M0R2P5 195 aa13.59□□□□□ -0.23
PDLIM3-202ENST00000284770 S100A6P06703 90 aa13.59□□□□□ -0.23
PDLIM3-202ENST00000284770 MIFP14174 115 aa13.59□□□□□ -0.23
PDLIM3-202ENST00000284770 AMN1Q8IY45 258 aa13.59□□□□□ -0.23
PDLIM3-202ENST00000284770 C5orf52A6NGY3 159 aa13.58□□□□□ -0.23
PDLIM3-202ENST00000284770 SRIP30626 198 aa13.58□□□□□ -0.23
PDLIM3-202ENST00000284770 NDUFA6P56556 154 aa13.58□□□□□ -0.23
PDLIM3-202ENST00000284770 DAZ2Q13117 558 aaKnown RBP13.58□□□□□ -0.23
PDLIM3-202ENST00000284770 ZNF876PQ49A33 203 aa13.58□□□□□ -0.23
PDLIM3-202ENST00000284770 SYT8Q8NBV8 401 aa13.58□□□□□ -0.23
PDLIM3-202ENST00000284770 PTH2Q96A98 100 aa13.58□□□□□ -0.23
PDLIM3-202ENST00000284770 ALKBH7Q9BT30 221 aaPredicted RBP13.58□□□□□ -0.23
PDLIM3-202ENST00000284770 NBEAL2Q6ZNJ1 2754 aa13.58□□□□□ -0.24
PDLIM3-202ENST00000284770 EVI2AP22794 236 aa13.58□□□□□ -0.24
PDLIM3-202ENST00000284770 SNRPEP62304 92 aaKnown RBP13.58□□□□□ -0.24
PDLIM3-202ENST00000284770 COA6Q5JTJ3 125 aaKnown RBP13.57□□□□□ -0.24
PDLIM3-202ENST00000284770 RNF185Q96GF1 192 aa13.57□□□□□ -0.24
PDLIM3-202ENST00000284770 RETNQ9HD89 108 aa13.57□□□□□ -0.24
PDLIM3-202ENST00000284770 PIK3CD-AS1Q5SR53 167 aa13.56□□□□□ -0.24
PDLIM3-202ENST00000284770 Q8NAQ8 132 aa13.56□□□□□ -0.24
PDLIM3-202ENST00000284770 NOP10Q9NPE3 64 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms