RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TRAV2A0A0B4J234 112 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 MRPS12O15235 138 aaKnown RBP8.75□□□□□ -1.01
VPS4A-201ENST00000254950 IGHV3-53P01767 116 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 C20orf173Q96LM9 149 aa8.75□□□□□ -1.01
VPS4A-201ENST00000254950 VCYO14598 125 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 HLA-DRB4P13762 266 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 PKIAP61925 76 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 RPL36AP83881 106 aaKnown RBP8.74□□□□□ -1.01
VPS4A-201ENST00000254950 LINC00322Q6ZN03 302 aaPredicted RBP8.74□□□□□ -1.01
VPS4A-201ENST00000254950 RPL36ALQ969Q0 106 aaKnown RBP8.74□□□□□ -1.01
VPS4A-201ENST00000254950 HLA-DRB4X5D2U9 266 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 IFITM10A6NMD0 228 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 COTL1Q14019 142 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 MORN3Q6PF18 240 aaPredicted RBP8.74□□□□□ -1.01
VPS4A-201ENST00000254950 LINC01549A6NIU2 74 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 LAGE3Q14657 143 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 C16orf95Q9H693 158 aa8.74□□□□□ -1.01
VPS4A-201ENST00000254950 ZNF80P51504 273 aaPredicted RBP8.73□□□□□ -1.01
VPS4A-201ENST00000254950 CFHR3Q02985 330 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 DEFB121Q5J5C9 76 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 ATOH7Q8N100 152 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 ESM1Q9NQ30 184 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 ASH1LQ9NR48 2969 aaKnown RBP8.73□□□□□ -1.01
VPS4A-201ENST00000254950 SMG1Q96Q15 3661 aaKnown RBP8.73□□□□□ -1.01
VPS4A-201ENST00000254950 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.73□□□□□ -1.01
VPS4A-201ENST00000254950 CSTL1Q9H114 145 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 GSN-AS1Q9NRJ2 163 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 DEFB130BP0DP73 79 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 DEFB130AP0DP74 79 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 Q8N2B8 174 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 IFI27L1Q96BM0 104 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 ODF3Q96PU9 254 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 PRADC1Q9BSG0 188 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 CHD6Q8TD26 2715 aa8.73□□□□□ -1.01
VPS4A-201ENST00000254950 IFI27P40305 119 aaPredicted RBP8.73□□□□□ -1.01
VPS4A-201ENST00000254950 SPATA45Q537H7 98 aa8.72□□□□□ -1.01
VPS4A-201ENST00000254950 TRPT1Q86TN4 253 aaKnown RBP8.72□□□□□ -1.01
VPS4A-201ENST00000254950 M0R2P5 195 aa8.72□□□□□ -1.01
VPS4A-201ENST00000254950 IGLV2-11P01706 119 aa8.72□□□□□ -1.01
VPS4A-201ENST00000254950 CTRLP40313 264 aa8.72□□□□□ -1.01
VPS4A-201ENST00000254950 FLNAP21333 2647 aaKnown RBP8.72□□□□□ -1.01
VPS4A-201ENST00000254950 AZU1P20160 251 aa8.72□□□□□ -1.01
VPS4A-201ENST00000254950 NMUP48645 174 aa8.72□□□□□ -1.01
VPS4A-201ENST00000254950 JOSD1Q15040 202 aaPredicted RBP8.72□□□□□ -1.01
VPS4A-201ENST00000254950 H3BMM0 161 aa8.71□□□□□ -1.01
VPS4A-201ENST00000254950 SUMO2P61956 95 aaKnown RBP8.71□□□□□ -1.01
VPS4A-201ENST00000254950 C19orf54Q5BKX5 351 aa8.71□□□□□ -1.02
VPS4A-201ENST00000254950 PET117Q6UWS5 81 aa8.71□□□□□ -1.02
VPS4A-201ENST00000254950 SPRY2O43597 315 aa8.71□□□□□ -1.02
VPS4A-201ENST00000254950 SCGB1D4Q6XE38 83 aa8.71□□□□□ -1.02
VPS4A-201ENST00000254950 ZNF493Q6ZR52 646 aa8.71□□□□□ -1.02
VPS4A-201ENST00000254950 TMEM101Q96IK0 257 aa8.71□□□□□ -1.02
VPS4A-201ENST00000254950 MSRB1Q9NZV6 116 aa8.71□□□□□ -1.02
VPS4A-201ENST00000254950 MED14OSP0DP75 135 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 PTTG1IPP53801 180 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 RIPPLY3P57055 190 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 Q8N1Y9 231 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 C20orf144Q9BQM9 153 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 GEMIN7Q9H840 131 aaKnown RBP8.7□□□□□ -1.02
VPS4A-201ENST00000254950 ITPR3Q14573 2671 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 GAGE12BA1L429 117 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 TMEM262E9PQX1 116 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 GAGE7O76087 117 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 GAGE12FP0CL80 117 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 GAGE12GP0CL81 117 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 GAGE12IP0CL82 117 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 TCTAP57738 103 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 DCANP1Q8TF63 244 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 NPYP01303 97 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 ZFAND2AQ8N6M9 145 aa8.7□□□□□ -1.02
VPS4A-201ENST00000254950 MRPL16Q9NX20 251 aaKnown RBP8.7□□□□□ -1.02
VPS4A-201ENST00000254950 TRAV26-2A0A0B4J265 109 aa8.69□□□□□ -1.02
VPS4A-201ENST00000254950 IGKV3D-20A0A0C4DH25 116 aa8.69□□□□□ -1.02
VPS4A-201ENST00000254950 SHISA2Q6UWI4 295 aa8.69□□□□□ -1.02
VPS4A-201ENST00000254950 VCX2Q9H322 139 aa8.69□□□□□ -1.02
VPS4A-201ENST00000254950 CRIP1P50238 77 aa8.69□□□□□ -1.02
VPS4A-201ENST00000254950 Q8N8P6 123 aa8.69□□□□□ -1.02
VPS4A-201ENST00000254950 C2orf88Q9BSF0 95 aa8.69□□□□□ -1.02
VPS4A-201ENST00000254950 IGHV3-16A0A0C4DH30 117 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 PMCHL2Q9BQD1 86 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 UQCR10Q9UDW1 63 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 KRTAP1-3Q8IUG1 177 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 FLNCQ14315 2725 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 IGKV3OR2-268A0A0C4DH90 116 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 SDHAF1A6NFY7 115 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 M0R143 59 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 FRMD6-AS1P0C7T7 363 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 C3orf79P0CE67 100 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 EDN2P20800 178 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 TMEM170BQ5T4T1 132 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 SMIM2Q9BVW6 85 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 SIGLEC8Q9NYZ4 499 aa8.68□□□□□ -1.02
VPS4A-201ENST00000254950 DAD1P61803 113 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 KLK9Q2XQG4 91 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 COA6Q5JTJ3 125 aaKnown RBP8.67□□□□□ -1.02
VPS4A-201ENST00000254950 SLC25A34Q6PIV7 304 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 PROK1P58294 105 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 GDF5OSQ5U4N7 250 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 DEFB104AQ8WTQ1 72 aa8.67□□□□□ -1.02
VPS4A-201ENST00000254950 NOP10Q9NPE3 64 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms