RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CRLF1O75462 422 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 C11orf86A6NJI1 115 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 F6UB75 175 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 NDUFA11Q86Y39 141 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 NEXN-AS1Q8NBZ9 246 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 CNFNQ9BYD5 112 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 PHLDA3Q9Y5J5 127 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 NOTCH3Q9UM47 2321 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 PIEZO1Q92508 2521 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 ZNF688P0C7X2 276 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 OPRPNQ99935 248 aaPredicted RBP10.97□□□□□ -0.65
SDC1-201ENST00000254351 JPT2Q9H910 190 aa10.97□□□□□ -0.65
SDC1-201ENST00000254351 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.97□□□□□ -0.656e-8■■■■□ 19.3
SDC1-201ENST00000254351 TRAV4A0A0B4J268 109 aa10.96□□□□□ -0.65
SDC1-201ENST00000254351 F5H697 171 aa10.96□□□□□ -0.65
SDC1-201ENST00000254351 GNRH2O43555 120 aa10.96□□□□□ -0.65
SDC1-201ENST00000254351 ADARB2-AS1A8MUL3 147 aa10.96□□□□□ -0.66
SDC1-201ENST00000254351 OR11H6Q8NGC7 330 aa10.96□□□□□ -0.66
SDC1-201ENST00000254351 C16orf92Q96LL3 132 aa10.96□□□□□ -0.66
SDC1-201ENST00000254351 TRAV2A0A0B4J234 112 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 CFC1BP0CG36 223 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 CFC1P0CG37 223 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 TSPEAR-AS2P59090 65 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 NPC2P61916 151 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 CCDC179H3BU77 68 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 BUB3O43684 328 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 IGFL3Q6UXB1 125 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 A0A087WWL8 130 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 SRD5A1P18405 259 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 PSMG4Q5JS54 123 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 FAM74A4Q5TZK3 123 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 KAAG1Q9UBP8 84 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 TP53TG1Q9Y2A0 90 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 SPTBN4Q9H254 2564 aa10.95□□□□□ -0.66
SDC1-201ENST00000254351 LINC01546A6NGU7 62 aa10.94□□□□□ -0.66
SDC1-201ENST00000254351 RNASE4P34096 147 aaKnown RBP10.94□□□□□ -0.66
SDC1-201ENST00000254351 SMIM20Q8N5G0 67 aa10.94□□□□□ -0.66
SDC1-201ENST00000254351 K7ENP7 123 aa10.94□□□□□ -0.66
SDC1-201ENST00000254351 ELANEP08246 267 aa10.94□□□□□ -0.66
SDC1-201ENST00000254351 CSMD2Q7Z408 3487 aa10.94□□□□□ -0.66
SDC1-201ENST00000254351 SLC25A20O43772 301 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 CD7P09564 240 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 ORMDL2Q53FV1 153 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 NTN5Q8WTR8 489 aaPredicted RBP10.93□□□□□ -0.66
SDC1-201ENST00000254351 LY6LH3BQJ8 138 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 UBE2D1P51668 147 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 TOMM6Q96B49 74 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 ZNF256Q9Y2P7 627 aaPredicted RBP10.93□□□□□ -0.66
SDC1-201ENST00000254351 VPS13CQ709C8 3753 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 SPG11Q96JI7 2443 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 HRNRQ86YZ3 2850 aaPredicted RBP10.93□□□□□ -0.66
SDC1-201ENST00000254351 TEX49A0A1B0GTD5 131 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 GAGE5Q13069 117 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 GAGE6Q13070 117 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 PRR30Q53SZ7 412 aaPredicted RBP10.93□□□□□ -0.66
SDC1-201ENST00000254351 PSMG3-AS1Q96PY0 264 aa10.93□□□□□ -0.66
SDC1-201ENST00000254351 A0A0J9YY99 117 aa10.92□□□□□ -0.66
SDC1-201ENST00000254351 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.92□□□□□ -0.66
SDC1-201ENST00000254351 SCGB2A1O75556 95 aa10.92□□□□□ -0.66
SDC1-201ENST00000254351 SNCGO76070 127 aa10.92□□□□□ -0.66
SDC1-201ENST00000254351 GAGE2BQ13066 116 aa10.92□□□□□ -0.66
SDC1-201ENST00000254351 GAGE2EQ4V326 116 aa10.92□□□□□ -0.66
SDC1-201ENST00000254351 GAGE2DQ9UEU5 116 aa10.92□□□□□ -0.66
SDC1-201ENST00000254351 GRNP28799 593 aaKnown RBP10.92□□□□□ -0.66
SDC1-201ENST00000254351 FAM57AQ8TBR7 257 aa10.92□□□□□ -0.66
SDC1-201ENST00000254351 ZNF580Q9UK33 172 aa10.92□□□□□ -0.66
SDC1-201ENST00000254351 A4D1N5 150 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 UBE2D3P61077 147 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 UBE2D2P62837 147 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 TTC32Q5I0X7 151 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 CRYGDP07320 174 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 UCNP55089 124 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 SHISA2Q6UWI4 295 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 COX8CQ7Z4L0 72 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 Q6ZS92 163 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 C20orf173Q96LM9 149 aa10.91□□□□□ -0.66
SDC1-201ENST00000254351 DOPEY2Q9Y3R5 2298 aa10.9□□□□□ -0.66
SDC1-201ENST00000254351 IGHV7-81A0A0B4J1V7 117 aa10.9□□□□□ -0.66
SDC1-201ENST00000254351 TRAV12-1A0A0B4J245 112 aa10.9□□□□□ -0.66
SDC1-201ENST00000254351 PRSS2P07478 247 aa10.9□□□□□ -0.66
SDC1-201ENST00000254351 ZNF672Q499Z4 452 aaPredicted RBP10.9□□□□□ -0.66
SDC1-201ENST00000254351 PRO1854Q9UHT4 67 aa10.9□□□□□ -0.66
SDC1-201ENST00000254351 C2CD3Q4AC94 2353 aa10.9□□□□□ -0.66
SDC1-201ENST00000254351 CRYBG3Q68DQ2 2970 aa10.9□□□□□ -0.66
SDC1-201ENST00000254351 NHLRC4P0CG21 123 aaPredicted RBP10.9□□□□□ -0.66
SDC1-201ENST00000254351 HERV-K104P63124 156 aa10.9□□□□□ -0.66
SDC1-201ENST00000254351 IGHV3OR16-10A0A075B7F0 116 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 ATP6V0E1O15342 81 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 COX6B1P14854 86 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 C10orf126Q8N4M7 172 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 ATP6V0E2Q8NHE4 81 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 SLC50A1Q9BRV3 221 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 TSHBP01222 138 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 IGKV3-20P01619 116 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 Q6ZSV7 163 aa10.89□□□□□ -0.67
SDC1-201ENST00000254351 CLPSL1A2RUU4 121 aa10.88□□□□□ -0.67
SDC1-201ENST00000254351 LGALS3P17931 250 aaKnown RBP10.88□□□□□ -0.67
SDC1-201ENST00000254351 TMEM219Q86XT9 240 aa10.88□□□□□ -0.67
SDC1-201ENST00000254351 ZNRF2Q8NHG8 242 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms